LOC120545637 (LOC106675582)


Basic Information

Item Value
gene id LOC120545637
gene name LOC106675582
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 33565354 ~ 33567283 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780170.1
GTGAGACTCAGACAGTCGTCACTGagcgagaggtgaaatggcgcagaaaggagttcagctggaccgggaaaccttctcttgttccatctgtctggatctactgaaggatccggtgactactccctgtggacacagctactgcatgaactgtattaaaagccactggGATGTAGAGGATCGTAAGTACAGCTACAGCTGTCCTCAGTGCAGGAAGACgttcacaccgaggcctgtcctgctgaaaagcaccatgttagcagatttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatttctgcactgggagaaaactcaaagcaCACAAGTCCTGTCTGCAATGTCTGGCTTCTTTCTGTGAGAAACACCTTCAATTTCATTATGAATCACCTCCATttaagaaacacaagctggtggagccgtccaagaagctccaggagaacaTCTGCTCTCAtcatgatgaggtgatgaagatgttctgtcgtactgatcagcagcttatctgttatctctgctctgtgaaggaacataaaggccacgacacagtctcagctgcagcagagagagctgagaggcagagagagctcgaggggagtcgacaaaacatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacagcaggcggaggccatcaatctctctgctgataaagcagtggaggacagcgagaagatcttcactgagctgatccgtctcctggagaaaagaagctctgatgtgaagcagcaggtcagatcccagcagaaaagtgaagtgagtcgagtcagagagcttcaggagaagctggagcaggagatcactgagctgaagaggaaagacgctgagctgaagaagctctcacacacagaggatcacaaccagtttctacacaactacccctcactgttaccactcagccaatcaacatccagcatccatatccgtcctctgagctgctttgaggatgtgacagcggccgtgtcagaattcagagataaactacaggacgtcctgagagagaagaggacaaacgtctcactgacagggactgaagtggacgttttactgctacaaccagagcccaagaccagagctggattcttaaaatattcacgtgaaatcacactggatccaaacacagtaAATACACGgctgttattatctgaggggaacaggaaagcaacaGTAATGAGTGAACATCAGtcttattctagtcacccagaTAGATTCATTTACTGGCgtcaggtcctgagtagagagagtctgactggacgttgttactgggaggtggagatgAGAGCGAGAGTTTAtgtagcagtcgcatacaagaatatcagcagagcaggaGGGTCAGATGAATGTTTATTTGGACGaaatgacaaatcttgggcGTTACATTGTAACAAAAGttatacattttgtttcaacaATGTCCAAACTCCAGTCTCAGGTcctgagtcctccagagtaggattgtacctggatcacagtgcaggtattctgtccttctacagcgtctctacaaccatgactctcctccacagagtccagaccacattcactcagccgctcTATGCTGGACTTTGGTTTTATTATTTGTCTCCTGGAGAttctgctgagttgtgtaaactgaaatagacagaagtcatttaagggttaaattctgtTTTAACTCTTTGACTTATttagtctccatgtttgttgctgAGAGCTGATCGTTGTGGCGTTTATTCACTTTTCTTCACTGCACAGAGATCAGCTGTCAATCACACATTTTGggatatttttgttttgtttaaagatTGTATTTTTGGGCAAAGACCGATGTGTTGTTTAAATGATGTAGAAAATGAGTTCCATTTG

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780170.1 True 1930 mRNA 0.46 1 33565354 33567283

Neighbor

gene id symbol gene type direction distance location
LOC120545741 NA coding upstream 239605 33321367 ~ 33325749 (+)
LOC120545739 LOC106675582 coding upstream 291827 33271236 ~ 33273527 (+)
LOC120545707 NA coding upstream 489215 33073364 ~ 33076139 (+)
LOC120545701 NA coding upstream 510470 33052912 ~ 33054884 (+)
LOC120545698 NA coding upstream 529122 33033850 ~ 33036232 (+)
xpo7 xpo7 coding downstream 48754 33616037 ~ 33656759 (+)
LOC120545885 NA coding downstream 121814 33689097 ~ 33691664 (+)
LOC120545091 NA coding downstream 181040 33748323 ~ 33749762 (+)
LOC120545622 myl5,LOC103390377 coding downstream 243564 33810847 ~ 33822738 (+)
LOC120545034 NA coding downstream 275891 33843174 ~ 33848883 (+)
G180010 NA non-coding upstream 219360 33345394 ~ 33345994 (+)
G180006 NA non-coding upstream 250704 33305144 ~ 33314650 (+)
G179992 NA non-coding upstream 306332 33256416 ~ 33259022 (+)
G179910 NA non-coding upstream 375783 33189247 ~ 33189571 (+)
G179905 NA non-coding upstream 391235 33145946 ~ 33174119 (+)
G180026 NA non-coding downstream 37688 33604971 ~ 33605298 (+)
G180039 NA non-coding downstream 137630 33704913 ~ 33757178 (+)
LOC120545890 NA non-coding downstream 138227 33705510 ~ 33706257 (+)
G180052 NA non-coding downstream 205442 33772725 ~ 33827102 (+)
G180079 NA non-coding downstream 294955 33862238 ~ 33862544 (+)
G179997 LOC102306450 other upstream 241289 33270996 ~ 33324065 (+)
abraxas1 fam175a other upstream 367397 33190021 ~ 33197957 (+)
G179903 NA other upstream 377726 33114691 ~ 33187628 (+)
mrps18c NA other upstream 455883 33103891 ~ 33109471 (+)
LOC120545086 LOC100699756 other upstream 581302 32964961 ~ 32984052 (+)
dmtn LOC102797496,LOC102303313,LOC101469122,LOC102075582 other downstream 141442 33708725 ~ 33745193 (+)
G180040 NA other downstream 257059 33824342 ~ 33825338 (+)
G180043 NA other downstream 270909 33838192 ~ 33839387 (+)
slc31a1 slc31a1 other downstream 715561 34282844 ~ 34308794 (+)
slc25a46 slc25a46,LOC102789456 other downstream 751310 34318593 ~ 34329263 (+)

Expression


Co-expression Network