RNA id: XM_039780170.1


Basic Information

Item Value
RNA id XM_039780170.1
length 1930
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC120545637
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 33565354 ~ 33567283 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAGACTCAGACAGTCGTCACTGagcgagaggtgaaatggcgcagaaaggagttcagctggaccgggaaaccttctcttgttccatctgtctggatctactgaaggatccggtgactactccctgtggacacagctactgcatgaactgtattaaaagccactggGATGTAGAGGATCGTAAGTACAGCTACAGCTGTCCTCAGTGCAGGAAGACgttcacaccgaggcctgtcctgctgaaaagcaccatgttagcagatttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatttctgcactgggagaaaactcaaagcaCACAAGTCCTGTCTGCAATGTCTGGCTTCTTTCTGTGAGAAACACCTTCAATTTCATTATGAATCACCTCCATttaagaaacacaagctggtggagccgtccaagaagctccaggagaacaTCTGCTCTCAtcatgatgaggtgatgaagatgttctgtcgtactgatcagcagcttatctgttatctctgctctgtgaaggaacataaaggccacgacacagtctcagctgcagcagagagagctgagaggcagagagagctcgaggggagtcgacaaaacatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacagcaggcggaggccatcaatctctctgctgataaagcagtggaggacagcgagaagatcttcactgagctgatccgtctcctggagaaaagaagctctgatgtgaagcagcaggtcagatcccagcagaaaagtgaagtgagtcgagtcagagagcttcaggagaagctggagcaggagatcactgagctgaagaggaaagacgctgagctgaagaagctctcacacacagaggatcacaaccagtttctacacaactacccctcactgttaccactcagccaatcaacatccagcatccatatccgtcctctgagctgctttgaggatgtgacagcggccgtgtcagaattcagagataaactacaggacgtcctgagagagaagaggacaaacgtctcactgacagggactgaagtggacgttttactgctacaaccagagcccaagaccagagctggattcttaaaatattcacgtgaaatcacactggatccaaacacagtaAATACACGgctgttattatctgaggggaacaggaaagcaacaGTAATGAGTGAACATCAGtcttattctagtcacccagaTAGATTCATTTACTGGCgtcaggtcctgagtagagagagtctgactggacgttgttactgggaggtggagatgAGAGCGAGAGTTTAtgtagcagtcgcatacaagaatatcagcagagcaggaGGGTCAGATGAATGTTTATTTGGACGaaatgacaaatcttgggcGTTACATTGTAACAAAAGttatacattttgtttcaacaATGTCCAAACTCCAGTCTCAGGTcctgagtcctccagagtaggattgtacctggatcacagtgcaggtattctgtccttctacagcgtctctacaaccatgactctcctccacagagtccagaccacattcactcagccgctcTATGCTGGACTTTGGTTTTATTATTTGTCTCCTGGAGAttctgctgagttgtgtaaactgaaatagacagaagtcatttaagggttaaattctgtTTTAACTCTTTGACTTATttagtctccatgtttgttgctgAGAGCTGATCGTTGTGGCGTTTATTCACTTTTCTTCACTGCACAGAGATCAGCTGTCAATCACACATTTTGggatatttttgttttgtttaaagatTGTATTTTTGGGCAAAGACCGATGTGTTGTTTAAATGATGTAGAAAATGAGTTCCATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243829 lncRNA upstream 219360 33345394 ~ 33345994 (+) True G180010
TU243823 lncRNA upstream 250704 33305144 ~ 33314650 (+) True G180006
TU243824 lncRNA upstream 250704 33305267 ~ 33314650 (+) False G180006
TU243800 lncRNA upstream 306332 33256416 ~ 33259022 (+) True G179992
TU243685 lncRNA upstream 375783 33189247 ~ 33189571 (+) True G179910
TU243845 lncRNA downstream 37688 33604971 ~ 33605298 (+) True G180026
TU243866 lncRNA downstream 137630 33704913 ~ 33757178 (+) True G180039
XR_005636752.1 lncRNA downstream 138227 33705510 ~ 33706257 (+) True LOC120545890
TU243875 lncRNA downstream 138246 33705529 ~ 33706216 (+) False LOC120545890
TU243882 lncRNA downstream 205442 33772725 ~ 33827102 (+) True G180052
XM_039780297.1 mRNA upstream 239605 33321367 ~ 33325749 (+) True LOC120545741
XM_039780298.1 mRNA upstream 239605 33321368 ~ 33325749 (+) False LOC120545741
XM_039780296.1 mRNA upstream 291827 33271236 ~ 33273527 (+) True LOC120545739
XM_039780270.1 mRNA upstream 367519 33190026 ~ 33197835 (+) False abraxas1
XM_039779079.1 mRNA upstream 455883 33103891 ~ 33109471 (+) True mrps18c
XM_039779943.1 mRNA downstream 48754 33616037 ~ 33656759 (+) True xpo7
XM_039779944.1 mRNA downstream 48754 33616037 ~ 33656759 (+) False xpo7
XM_039779945.1 mRNA downstream 48754 33616037 ~ 33656759 (+) False xpo7
XM_039780515.1 mRNA downstream 121814 33689097 ~ 33691664 (+) True LOC120545885
XM_039779123.1 mRNA downstream 141442 33708725 ~ 33737654 (+) False dmtn
TU243808 other upstream 241289 33270996 ~ 33324065 (+) True G179997
TU243809 other upstream 292143 33270996 ~ 33273211 (+) False G179997
TU243665 other upstream 367397 33190119 ~ 33197957 (+) True abraxas1
TU243663 other upstream 367518 33190119 ~ 33197836 (+) False abraxas1
XR_005636627.1 other downstream 141444 33708727 ~ 33744528 (+) False dmtn
TU243867 other downstream 257059 33824342 ~ 33825338 (+) False G180040
TU243868 other downstream 257059 33824342 ~ 33825338 (+) True G180040
TU243872 other downstream 270909 33838192 ~ 33839387 (+) True G180043
TU244008 other downstream 751310 34318593 ~ 34328313 (+) False slc25a46

Expression Profile