RNA id: TU243800


Basic Information

Item Value
RNA id TU243800
length 2574
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G179992
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 33256416 ~ 33259022 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCCCAGTTTTgatcagccccccccccccttccctttATAGCACACTTACAATGACCTAACatatctaaatacttcttccaccgctgacaCTAATGAACGACTATAAATCCAAACTGTACCTTTGTCAGCTTCCGGTAAAGGACTGGAGtcgactacacacacacacacacacacacacaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagttagagAAAGTTTGTTGTTGATGTCAGAGTTTGCTTCCAACACCTGcaagtttatttcattcatagcacttctgaaaaaaaataaaaaaaactcataaataaACATAGATCCAGCCCTCCAGAAATGCtgttaaaacacacatttagaTTTTAAAGAAACGCATTCATCCCATGAATGTCAACATTTTAATCAACTTAAATCCAAACCGAACCTTTCTCAGTTTGCAGAAAACGATTGGAGGCgaccaaaacaaaacaataaaaatccaGTTTGCTTTTTCCCCAGAAAGTGAAATCCAACGTGTTGATTTTTACCATTTTTAGAGGACTCGGCAAACAGGAGAGCAGTGAGGAGCAGATGCAACATGTTGTCAGAGGTCAGGAGTCAGACTGAGGCCTGCAGCTCATTTGATGACTAACAGGTGGTTAGTCTCATTAAGTCAAATGAGCTGCCAGCTCTGCCTCTTTTATCCCTGTGGATCTGAAAACACAGCTCCTGAGACTACAAATTCccagggttttccctgccattGAATGTAACTAAAAGCCTTCTCTCTgatgattgtagttggacttcttCAGGAAGTTTGGGCtttaactcttgtgttgtcttcctgtcgaccataaaaaaaatgtgtgtgtgtgtgtgtgtgggtgtgggtgtaaaggctgatttatgcttctgcgtcaactccacgCCGTAACTAAGAACTTGCTGTCCCTGTCTCAACGTCttggtcattttttttcaacatttgcaTTGTTGAATTTACCCAGAACCCATcactacggtggccgacaggggcaaacgcactgcaactacaaaaaaaaaacacacatgcgaaGAGTTCAGCAGAGATGCTGCAAATACACTCAACACATCCAAATACACGAGCGCGCCGCAAATatagaaacgatgcaaaaagaaaatcacacaaACCCCggaaaaaacaaatgcaacagatAAAGCGCTGCATCCAGTtcacacaacggaagttctccaggcctctagggggagCTACGTGGAACAGCTTGACTTTCGACctcacggagagagagagagagagagacagcgagagagagagagagagacacagacagacagacagagagcgcAAATGAGAAAACAGgattttgtctatttgcatgtgttttcgtAAGTTGCACCGTACACCAGCCACCGTACATCACATTAACAACCAGTGACGcactggccatctggaatttgggcaaattATGGTATTTGACTAATTTGCATAATGTGAAAAACAAGTAAATGAATAGAACTTTGTCAATTTTGATTGTATCAAGACCAAAATTGGTGAACGGCCTTGCGGGACTGAGAtacatatttatacatatataaattagCAAGATTCGCCATAAAACATGGCCGCCATCAATCAAAGAACATCCTAAAGGGCGGGGCTAGCAGGGTATTGCCTATAACCCGAGTTCTGCTGTAGCAATCCTGTCTAAAATTGATGGAGACATTTAACACCATGACCCGAACGTACATACCAAGTTTCGTTAAAATCCGACAAAGGGGGCGAAATCGCGGGACTTGCGGCATCTATTGTAGTGATGAAACAGGTGTGTGGTTGGTTTCACCACGTCTTCTAATAGAGCATTCAACCATCTGAAGTGTTTTTTCTCATCTTTGTGAAGCTACAAACCCCCTCAACTCTGCTTGCGGCCCTGCAGTCTGATCTCAAAGTGAAtgaatgtgagtgaaagcgACCTGTAATAAGTGAAAGTGCTTTGAGAAGCCGAGAAAGGGTTTGAACCCGTGAATTGCTGCTTGCGGCTATATTTGTAGGTTTTTTTAatctctttgtagttgttttgtgtcGCTTTGCGTCTCTCCAACCCatattttgaagcttttttacAAAGGGCTTTGTTCATATATCATTAAGAGCTTGATTTATACAACATATATTTACGAAAATGTAATTCCCAACAACCTGGTCATTGATTTTTCCTTTGAAATCACCTGtgcaaacacagaaaaaaaaatcatacatattttgggtttttataaataaataaaagccaaTCTAGTATTTCTTTCTGGTGTTATTGTGAGCTCTAGTGGCGGCGTTCGGGTGCTGCAGGGAGCCGGATGGAgaggcagaagaagaagatgtatgatccttttttgtttgttagcaGAAGCATGCCCTCCGCTGTCGACACCATGAGGCAATTTTTCATCCCCCATCTATTCATGGACATCTGGTGAAAAGTAGGAGAGATGAGAAGCGTAGTTAGC

Function

GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243685 lncRNA upstream 66845 33189247 ~ 33189571 (+) True G179910
TU243672 lncRNA upstream 68788 33114691 ~ 33187628 (+) False G179903
TU243677 lncRNA upstream 82297 33145946 ~ 33174119 (+) True G179905
TU243676 lncRNA upstream 124773 33130849 ~ 33131643 (+) True G179904
TU243669 lncRNA upstream 138657 33115765 ~ 33117759 (+) True G179903
TU243823 lncRNA downstream 46122 33305144 ~ 33314650 (+) True G180006
TU243824 lncRNA downstream 46245 33305267 ~ 33314650 (+) False G180006
TU243829 lncRNA downstream 86372 33345394 ~ 33345994 (+) True G180010
TU243845 lncRNA downstream 345949 33604971 ~ 33605298 (+) True G180026
TU243866 lncRNA downstream 445891 33704913 ~ 33757178 (+) True G180039
XM_039780270.1 mRNA upstream 58581 33190026 ~ 33197835 (+) False abraxas1
XM_039779079.1 mRNA upstream 146945 33103891 ~ 33109471 (+) True mrps18c
XM_039780257.1 mRNA upstream 180277 33073364 ~ 33076139 (+) True LOC120545707
XM_039780253.1 mRNA upstream 201532 33052912 ~ 33054884 (+) True LOC120545701
XM_039780251.1 mRNA upstream 220184 33033850 ~ 33036232 (+) True LOC120545698
XM_039780296.1 mRNA downstream 12214 33271236 ~ 33273527 (+) True LOC120545739
XM_039780297.1 mRNA downstream 62345 33321367 ~ 33325749 (+) True LOC120545741
XM_039780298.1 mRNA downstream 62346 33321368 ~ 33325749 (+) False LOC120545741
XM_039780170.1 mRNA downstream 306332 33565354 ~ 33567283 (+) True LOC120545637
XM_039779943.1 mRNA downstream 357015 33616037 ~ 33656759 (+) True xpo7
TU243665 other upstream 58459 33190119 ~ 33197957 (+) True abraxas1
TU243664 other upstream 58580 33190021 ~ 33197836 (+) False abraxas1
TU243663 other upstream 58580 33190119 ~ 33197836 (+) False abraxas1
TU243666 other upstream 58580 33190119 ~ 33197836 (+) False abraxas1
TU243667 other upstream 58866 33190119 ~ 33197550 (+) False abraxas1
TU243808 other downstream 11974 33270996 ~ 33324065 (+) True G179997
TU243809 other downstream 11974 33270996 ~ 33273211 (+) False G179997
XR_005636627.1 other downstream 449705 33708727 ~ 33744528 (+) False dmtn
TU243867 other downstream 565320 33824342 ~ 33825338 (+) False G180040
TU243868 other downstream 565320 33824342 ~ 33825338 (+) True G180040

Expression Profile