RNA id: TU243677


Basic Information

Item Value
RNA id TU243677
length 232
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G179905
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 33145946 ~ 33174119 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtatgtgtgtgtgtgtgtctgtgtgtgtatgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243676 lncRNA upstream 14303 33130849 ~ 33131643 (+) True G179904
TU243669 lncRNA upstream 28187 33115765 ~ 33117759 (+) True G179903
TU243671 lncRNA upstream 28187 33115765 ~ 33117759 (+) False G179903
TU243674 lncRNA upstream 28187 33115765 ~ 33117759 (+) False G179903
TU243675 lncRNA upstream 28390 33114691 ~ 33117556 (+) False G179903
TU243685 lncRNA downstream 15128 33189247 ~ 33189571 (+) True G179910
TU243800 lncRNA downstream 82297 33256416 ~ 33259022 (+) True G179992
TU243823 lncRNA downstream 131025 33305144 ~ 33314650 (+) True G180006
TU243824 lncRNA downstream 131148 33305267 ~ 33314650 (+) False G180006
TU243829 lncRNA downstream 171275 33345394 ~ 33345994 (+) True G180010
XM_039779079.1 mRNA upstream 36475 33103891 ~ 33109471 (+) True mrps18c
XM_039780257.1 mRNA upstream 69807 33073364 ~ 33076139 (+) True LOC120545707
XM_039780253.1 mRNA upstream 91062 33052912 ~ 33054884 (+) True LOC120545701
XM_039780251.1 mRNA upstream 109714 33033850 ~ 33036232 (+) True LOC120545698
XM_039780252.1 mRNA upstream 115629 33027615 ~ 33030317 (+) True LOC120545699
XM_039780270.1 mRNA downstream 15907 33190026 ~ 33197835 (+) False abraxas1
XM_039780296.1 mRNA downstream 97117 33271236 ~ 33273527 (+) True LOC120545739
XM_039780297.1 mRNA downstream 147248 33321367 ~ 33325749 (+) True LOC120545741
XM_039780298.1 mRNA downstream 147249 33321368 ~ 33325749 (+) False LOC120545741
XM_039780170.1 mRNA downstream 391235 33565354 ~ 33567283 (+) True LOC120545637
TU243616 other upstream 161894 32964961 ~ 32984052 (+) True LOC120545086
TU243411 other upstream 697131 32442055 ~ 32448815 (+) True LOC120545732
TU243294 other upstream 1046404 32079177 ~ 32099542 (+) True G179655
TU243664 other downstream 15902 33190021 ~ 33197836 (+) False abraxas1
TU243663 other downstream 16000 33190119 ~ 33197836 (+) False abraxas1
TU243665 other downstream 16000 33190119 ~ 33197957 (+) True abraxas1
TU243666 other downstream 16000 33190119 ~ 33197836 (+) False abraxas1
TU243667 other downstream 16000 33190119 ~ 33197550 (+) False abraxas1

Expression Profile