RNA id: TU243824


Basic Information

Item Value
RNA id TU243824
length 270
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G180006
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 33305144 ~ 33314650 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagacatcacaggccacatcttcagctccagcatagcagtgatcagcaggagcagcttggagtccagtcttcttcagctccagcatagcagtgatcagcaggagcagcttggagtccagtcttcttcagctcctccactaaatctgctaacatggtgtttttcagcaggacaggcctcggtgtgaacGTCTTCCTGCACTGAGGACAGCTGTGCTGTACTTACGATCCTCTACATCCCAGTGTcttttaatacagttcatgcagtagtTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243800 lncRNA upstream 46245 33256416 ~ 33259022 (+) True G179992
TU243685 lncRNA upstream 115696 33189247 ~ 33189571 (+) True G179910
TU243677 lncRNA upstream 131148 33145946 ~ 33174119 (+) True G179905
TU243676 lncRNA upstream 173624 33130849 ~ 33131643 (+) True G179904
TU243674 lncRNA upstream 187508 33115765 ~ 33117759 (+) False G179903
TU243829 lncRNA downstream 30744 33345394 ~ 33345994 (+) True G180010
TU243845 lncRNA downstream 290321 33604971 ~ 33605298 (+) True G180026
TU243866 lncRNA downstream 390263 33704913 ~ 33757178 (+) True G180039
XR_005636752.1 lncRNA downstream 390860 33705510 ~ 33706257 (+) True LOC120545890
TU243875 lncRNA downstream 390879 33705529 ~ 33706216 (+) False LOC120545890
XM_039780296.1 mRNA upstream 31740 33271236 ~ 33273527 (+) True LOC120545739
XM_039780270.1 mRNA upstream 107432 33190026 ~ 33197835 (+) False abraxas1
XM_039779079.1 mRNA upstream 195796 33103891 ~ 33109471 (+) True mrps18c
XM_039780257.1 mRNA upstream 229128 33073364 ~ 33076139 (+) True LOC120545707
XM_039780253.1 mRNA upstream 250383 33052912 ~ 33054884 (+) True LOC120545701
XM_039780297.1 mRNA downstream 6717 33321367 ~ 33325749 (+) True LOC120545741
XM_039780298.1 mRNA downstream 6718 33321368 ~ 33325749 (+) False LOC120545741
XM_039780170.1 mRNA downstream 250704 33565354 ~ 33567283 (+) True LOC120545637
XM_039779943.1 mRNA downstream 301387 33616037 ~ 33656759 (+) True xpo7
XM_039779944.1 mRNA downstream 301387 33616037 ~ 33656759 (+) False xpo7
TU243809 other upstream 32056 33270996 ~ 33273211 (+) False G179997
TU243665 other upstream 107310 33190119 ~ 33197957 (+) True abraxas1
TU243663 other upstream 107431 33190119 ~ 33197836 (+) False abraxas1
XR_005636627.1 other downstream 394077 33708727 ~ 33744528 (+) False dmtn
TU243867 other downstream 509692 33824342 ~ 33825338 (+) False G180040
TU243868 other downstream 509692 33824342 ~ 33825338 (+) True G180040
TU243872 other downstream 523542 33838192 ~ 33839387 (+) True G180043
TU244008 other downstream 1003943 34318593 ~ 34328313 (+) False slc25a46

Expression Profile