G179997 (LOC102306450)


Basic Information

Item Value
gene id G179997
gene name LOC102306450
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 33270996 ~ 33324065 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU243808
ggaaattgaataaatactttgtatttggttgaattgtcactgccatgtgtcaaatcttttcttttgtaaatctgagcaattattaataataacaacaaaaacactaataataataatcaaaatatGAATGAAACACCCCTACTCCTGCGACTCATCCAACCCGCCACCAAtctatgatctttttttttgtggggggtcACTCTTgactgtcttcaaaacttgagagccctggtaATGTAAATAACGGAGGAGGCTCTCCAGTCCATGTTGAGAGTGTAAACTCTGTTATTTCATGTTTAGGAGCAGAGGAGCGGACAGTAGGAGACAGTAGACCAGAAGCCATTCATGTGATATTGTCTTCTGCAGACGAGCGCTGAGTCATCTGGAGAAACACACCTGAGGGAGACGTGCAGAGAGATTGGACAGTGTCGTTTCCCAGCACAGAAGGAAAAGGACGAAGTTACGTAACGCTGTGAGACGTAAACGCACGTGATTCTTCAACGTGTAACAGCCGGCTGAGGGAAGTCCATATACGGTCGGACAGGTGTGTCGGCAGGTTCACAGCTGTGCTGGGAGGGTTTGacctgcagagacagagactcacagagacagacagacaaacacacagacagtcgtCACTGAGAGGTGAAATGGAgcagaaaggagttcagctggaccgggaaaccttctcttgttccatctgtctggatctactgaaggagCCGGTGActactccctgtggacacagctactgcatgaactgtattaaaagccactggGATGTAGAGGATCATAAGTACAGCTACAGCTGTCCTCAGTGCAGGAAGACgttcacaccgaggcctgtcctgctgaaaaacaccatgttagcagatttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcaccgGGAGAAAACTCAAAGCTCACAAGTCCTGTCTGATCTGTCTTGTCTCTTACTGTGAGAAACACCTTCAATGTCATTATAATGTAGCTCCattaaagaaacacaagctggtggagccgtccaagaagctccagga
>TU243809
ggaaattgaataaatactttgtatttggttgaattgtcactgccatgtgtcaaatcttttcttttgtaaatctgagcaattattaataataacaacaaaaacactaataataataatcaaaatatGAATGAAACACCCCTACTCCTGCGACTCATCCAACCCGCCACCAAtctatgatctttttttttgtggggggtcACTCTTgactgtcttcaaaacttgagagccctggtaATGTAAATAACGGAGGAGGCTCTCCAGTCCATGTTGAGAGTGTAAACTCTGTTATTTCATGTTTAGGAGCAGAGGAGCGGACAGTAGGAGACAGTAGACCAGAAGCCATTCATGTGATATTGTCTTCTGCAGagacagacagtcgTTGTCACTGAGCGAGAGGTGAAATGGAGCAGGaaggagttcagctggaccgggaagccttctcttgttccatctgtctggatctactgaaggatccggtgactactccctgtggacacagctactgcatgaactgtattaaaagccactggGATGTAGAGGATCGTAAGTACATCTACAGCTGTCCTCAGTGCAGGAAGACgttcacaccgaggcctgtcctgctgaaaaacaccatgttagcagatttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcaccgGGAGAAAACTCAAAGCTCACAA

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243808 True 1102 TUCP 0.46 3 33270996 33324065
TU243809 False 742 TUCP 0.45 2 33270996 33273211

Neighbor

gene id symbol gene type direction distance location
LOC120545707 NA coding upstream 194857 33073364 ~ 33076139 (+)
LOC120545701 NA coding upstream 216112 33052912 ~ 33054884 (+)
LOC120545698 NA coding upstream 234764 33033850 ~ 33036232 (+)
LOC120545699 NA coding upstream 240679 33027615 ~ 33030317 (+)
psmb6 psmb6,LOC107372744,LOC103460825,LOC101466438 coding upstream 321572 32940410 ~ 32949424 (+)
LOC120545637 LOC106675582 coding downstream 241289 33565354 ~ 33567283 (+)
xpo7 xpo7 coding downstream 291972 33616037 ~ 33656759 (+)
LOC120545885 NA coding downstream 365032 33689097 ~ 33691664 (+)
LOC120545091 NA coding downstream 424258 33748323 ~ 33749762 (+)
LOC120545622 myl5,LOC103390377 coding downstream 486782 33810847 ~ 33822738 (+)
G179992 NA non-coding upstream 11974 33256416 ~ 33259022 (+)
G179910 NA non-coding upstream 81425 33189247 ~ 33189571 (+)
G179905 NA non-coding upstream 96877 33145946 ~ 33174119 (+)
G179904 NA non-coding upstream 139353 33130849 ~ 33131643 (+)
G179897 helq non-coding upstream 174394 33094063 ~ 33096602 (+)
G180010 NA non-coding downstream 21329 33345394 ~ 33345994 (+)
G180026 NA non-coding downstream 280906 33604971 ~ 33605298 (+)
G180039 NA non-coding downstream 380848 33704913 ~ 33757178 (+)
LOC120545890 NA non-coding downstream 381445 33705510 ~ 33706257 (+)
G180052 NA non-coding downstream 448660 33772725 ~ 33827102 (+)
abraxas1 fam175a other upstream 73039 33190021 ~ 33197957 (+)
G179903 NA other upstream 83368 33114691 ~ 33187628 (+)
mrps18c NA other upstream 161525 33103891 ~ 33109471 (+)
LOC120545086 LOC100699756 other upstream 286944 32964961 ~ 32984052 (+)
LOC120545732 lage3,LOC103372999 other upstream 822181 32442010 ~ 32448815 (+)
dmtn LOC102797496,LOC102303313,LOC101469122,LOC102075582 other downstream 384660 33708725 ~ 33745193 (+)
G180040 NA other downstream 500277 33824342 ~ 33825338 (+)
G180043 NA other downstream 514127 33838192 ~ 33839387 (+)
slc31a1 slc31a1 other downstream 958779 34282844 ~ 34308794 (+)
slc25a46 slc25a46,LOC102789456 other downstream 994528 34318593 ~ 34329263 (+)

Expression


Co-expression Network