G179897 (helq)


Basic Information

Item Value
gene id G179897
gene name helq
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 33094063 ~ 33096602 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU243655
GAGTGGGAcaagtctctgtctgtctgtctgtctgtctgcacctgCAGAGGAACAGACGACAGGTTAGAGTAGGAcaagtctctgtctgtctgtctgcacctgCAGAGGCACAGACGACAGGTTAGAGTAGGAcaagtctctgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtatctgtcgcATGTGCAGTACAGCAGCGGGGGAGTTGCTGCATCCCTCGTCCATAtccacgacgtttcatttccaggaCTGCTCAGTGTGCGAGGCTCCTCTGTACGTGAAGTATTAttaagacattttttaaaaatgcAACGGAAAGTTTCAGAAGCCCTTTCCCCGGGCGGGTACCTTCTCCTGCACCAGGGATATGTACGGTAGGATGAACAGACAGTCCTTCTTCCGGCACAGCAGCTCTCGGAGGACCAGGATCTCGGCCACCAGAGTCTTCCCTCCGCTGGTGGGGAGGGAGTAGATCAGGTTCCTCCTCTGCTGCACACAGTCCAGGTTCAGACACGTCTCCTGCCAGTCTGGAACACACCAAGAGTCCGATAACCACCAGAGATATTCAAATGTTGCTTGGACacacctgcccccactgcttaaaaacaaataacctACAGGAAACACtgttttaatatctgtttatttattattaaagtgatggttcggagtaattcaccctagggtcctttgcaccatgacctcgagaacaa

Function

symbol description
helq Predicted to enable ATP binding activity and nucleic acid binding activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Orthologous to human HELQ (helicase, POLQ like).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: helicase POLQ-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243655 True 720 lncRNA 0.50 2 33094063 33096602

Neighbor

gene id symbol gene type direction distance location
LOC120545707 NA coding upstream 17924 33073364 ~ 33076139 (+)
LOC120545701 NA coding upstream 39179 33052912 ~ 33054884 (+)
LOC120545698 NA coding upstream 57831 33033850 ~ 33036232 (+)
LOC120545699 NA coding upstream 63746 33027615 ~ 33030317 (+)
psmb6 psmb6,LOC107372744,LOC103460825,LOC101466438 coding upstream 144639 32940410 ~ 32949424 (+)
LOC120545739 LOC106675582 coding downstream 174634 33271236 ~ 33273527 (+)
LOC120545741 NA coding downstream 224765 33321367 ~ 33325749 (+)
LOC120545637 LOC106675582 coding downstream 468752 33565354 ~ 33567283 (+)
xpo7 xpo7 coding downstream 519435 33616037 ~ 33656759 (+)
LOC120545885 NA coding downstream 592495 33689097 ~ 33691664 (+)
G179876 NA non-coding upstream 75611 33017455 ~ 33018452 (+)
G179873 helq non-coding upstream 82807 33009719 ~ 33011256 (+)
G179870 NA non-coding upstream 85710 33003214 ~ 33008353 (+)
G179863 NA non-coding upstream 156306 32937042 ~ 32937757 (+)
G179853 NA non-coding upstream 168821 32883780 ~ 32925242 (+)
G179904 NA non-coding downstream 34247 33130849 ~ 33131643 (+)
G179905 NA non-coding downstream 49344 33145946 ~ 33174119 (+)
G179910 NA non-coding downstream 92645 33189247 ~ 33189571 (+)
G179992 NA non-coding downstream 159814 33256416 ~ 33259022 (+)
G180006 NA non-coding downstream 208542 33305144 ~ 33314650 (+)
LOC120545086 LOC100699756 other upstream 110011 32964961 ~ 32984052 (+)
LOC120545732 lage3,LOC103372999 other upstream 645248 32442010 ~ 32448815 (+)
G179655 cox5b,LOC106567989,LOC106563057 other upstream 994521 32079177 ~ 32099542 (+)
LOC120545711 NA other upstream 1016053 32059925 ~ 32078010 (+)
LOC120544927 NA other upstream 1261803 31811729 ~ 31832260 (+)
mrps18c NA other downstream 7289 33103891 ~ 33109471 (+)
G179903 NA other downstream 18089 33114691 ~ 33187628 (+)
abraxas1 fam175a other downstream 93419 33190021 ~ 33197957 (+)
G179997 LOC102306450 other downstream 174394 33270996 ~ 33324065 (+)
dmtn LOC102797496,LOC102303313,LOC101469122,LOC102075582 other downstream 612123 33708725 ~ 33745193 (+)

Expression


Co-expression Network