RNA id: TU243912


Basic Information

Item Value
RNA id TU243912
length 307
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G180079
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 33862238 ~ 33862544 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatgcgtttcctttttattttcatgactatttacattgtagattctcactgaaggcatcaaaactatgaatgaacacatatggaattatgtacttaacacaaaagtgtgaaataactgaaaacatgtcttatattttagattcttcaaagtagccaccctttgcttttttattaataagggaaaaacttccactaattaaccctgacaaagcacacctgtgaaggtaaaaccatttcaggtgactacctcatgaagctcattgagagaacaccaagggtttgcagagttatcaaaaaaagcaaaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243882 lncRNA upstream 35136 33772725 ~ 33827102 (+) True G180052
TU243866 lncRNA upstream 105060 33704913 ~ 33757178 (+) True G180039
XR_005636752.1 lncRNA upstream 155981 33705510 ~ 33706257 (+) True LOC120545890
TU243875 lncRNA upstream 156022 33705529 ~ 33706216 (+) False LOC120545890
TU243845 lncRNA upstream 256940 33604971 ~ 33605298 (+) True G180026
TU243937 lncRNA downstream 101563 33964107 ~ 33978242 (+) True G180095
TU243942 lncRNA downstream 114516 33977060 ~ 33979397 (+) False G180098
TU243940 lncRNA downstream 116143 33978687 ~ 33982151 (+) True G180098
TU243941 lncRNA downstream 116143 33978687 ~ 33982151 (+) False G180098
TU243944 lncRNA downstream 119829 33982373 ~ 33982825 (+) True G180100
XM_039778971.1 mRNA upstream 13355 33843174 ~ 33848883 (+) True LOC120545034
XM_039780138.1 mRNA upstream 39500 33810847 ~ 33822738 (+) True LOC120545622
XM_039779081.1 mRNA upstream 112476 33748323 ~ 33749762 (+) True LOC120545091
XM_039779121.1 mRNA upstream 117045 33708728 ~ 33745193 (+) True dmtn
XM_039779122.1 mRNA upstream 117045 33708729 ~ 33745193 (+) False dmtn
XM_039779447.1 mRNA downstream 9968 33872512 ~ 33879659 (+) True LOC120545259
XM_039779448.1 mRNA downstream 10033 33872577 ~ 33879659 (+) False LOC120545259
XM_039779449.1 mRNA downstream 32106 33894650 ~ 33899057 (+) True LOC120545260
XM_039779085.1 mRNA downstream 36637 33899181 ~ 33906162 (+) True LOC120545095
XM_039779451.1 mRNA downstream 73699 33936243 ~ 33949251 (+) True LOC120545261
TU243872 other upstream 22851 33838192 ~ 33839387 (+) True G180043
TU243867 other upstream 36900 33824342 ~ 33825338 (+) False G180040
TU243868 other upstream 36900 33824342 ~ 33825338 (+) True G180040
XR_005636627.1 other upstream 117710 33708727 ~ 33744528 (+) False dmtn
TU243808 other upstream 538173 33270996 ~ 33324065 (+) True G179997
TU244008 other downstream 456049 34318593 ~ 34328313 (+) False slc25a46
TU244006 other downstream 456104 34318648 ~ 34328313 (+) False slc25a46
TU244084 other downstream 695038 34557582 ~ 34560385 (+) True G180199
TU244088 other downstream 702336 34564880 ~ 34565952 (+) True G180201
TU244135 other downstream 853742 34716286 ~ 34803591 (+) False G180213

Expression Profile