RNA id: TU244135


Basic Information

Item Value
RNA id TU244135
length 1133
RNA type TUCP
GC content 0.44
exon number 2
gene id G180213
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 34716286 ~ 34803750 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggaagttcatGTATGTGTTCCCGCCCTTCTCTCTGTGCTGGGCGGAGCTTCTGGAGCTGAAGGTTCGAGTCCCGTGTGAAACGCTCGACTACGTGACGGCAAACTACGGCGCGGCCTGGAACGTCCCGGTGAGGAGCTGGGACTGGAAGACGTCGCCTAGCAACGTGCAGGAAAACGGGGTGTGGCCTCCAGCAGAGTGGGCGGAGCTTATCCAAGTTTACTGACACTCAAAACTACAAATAAAGACATGGAACTACAAATAAAGATATGGAACTACAAATAAAGAAACTACAAATAAAGAGAAAGTGGAAAGAGACACGCTGATGTTTTTGAGTGCTGAGATCCTGAGACCGCGATGTTTACGCCTCCCTCCGTGCACACGCCCCTCCCCGCACACTCTTCCCTCCGTGCACACACCTCCCTCCTGCACACTCTTCCCTCCGTGCAcgcgcccccccccccgagactatttagaggccctgtggctccgtccggagcttagccccacccacgatgattgtgattggtttaaagaaatgctgataaaccagagcatgttgttctatcccagaatgcatctgtggtgtagtcTCGGGCACGTTGAGCGTCTGAACGGTGTGCAGcgtgttgctatggttaccgTGTTGTCTCTGTGACCACGGTGTCTGTAAACAGATTATTTAATTCTGAGTTCAGTAGGAAACTGGTAGCTGATGATTAAAGTGctgtaactgtgtaataacatgATAACGAGATATAAAAAGCTTACCAGCTGTTATTATCAGATTATAACACGTTAGTTTCTAAATGTGTGAAAGGAAATCAAAGgtttatatatttaatgaacTAAAACTCTCTTTCTCCTGTAGTCCTGAAACCAAACCTggacctgtttttattttgctgcTTCACAACAAACtgacacattattattattattattatttaaatgttatgtttatttcagctgttttcagacatattttattatattgtattataattCTTCTGTTCCAACATCTCTCTTCAGCAAATGGggcaattataaaaaatatctgAGTTCAGTTTATTCCACCAGACTCTGGTCATCACTTTTACTCACACGGTTATTGTATTACCAAATAAAACCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244153 lncRNA upstream 60614 34651754 ~ 34655672 (+) True G180224
TU244105 lncRNA upstream 88744 34620273 ~ 34627542 (+) False G180205
TU244108 lncRNA upstream 88744 34620273 ~ 34627542 (+) True G180205
TU244150 lncRNA upstream 99198 34615613 ~ 34617088 (+) True G180221
TU244098 lncRNA upstream 104983 34573541 ~ 34611303 (+) True G180203
TU244185 lncRNA downstream 2434 34806025 ~ 34848183 (+) True G180246
TU244134 lncRNA downstream 20579 34824170 ~ 34870769 (+) False G180212
TU244188 lncRNA downstream 27992 34831583 ~ 34832109 (+) True G180249
TU244130 lncRNA downstream 51567 34855158 ~ 34858324 (+) True G180212
TU244147 lncRNA downstream 66757 34870348 ~ 34896644 (+) True G180219
XM_039779456.1 mRNA upstream 360930 34332321 ~ 34355356 (+) True wdr36
XM_039779485.1 mRNA upstream 387023 34318618 ~ 34329263 (+) True slc25a46
XM_039779572.1 mRNA upstream 408308 34300493 ~ 34307978 (+) True slc31a1
XM_039779571.1 mRNA upstream 408308 34302660 ~ 34307978 (+) False slc31a1
XM_039779453.1 mRNA upstream 669662 33997414 ~ 34046624 (+) False LOC120545262
XM_039779578.1 mRNA downstream 47010 34850601 ~ 34851604 (+) True si:ch211-202f5.2
XM_039779566.1 mRNA downstream 141384 34944975 ~ 34948439 (+) False LOC120545317
XM_039779455.1 mRNA downstream 183079 34986670 ~ 35023782 (+) True LOC120545265
XM_039779470.1 mRNA downstream 330880 35134471 ~ 35143485 (+) True LOC120545273
XM_039779469.1 mRNA downstream 401490 35205081 ~ 35232148 (+) True LOC120545272
TU244088 other upstream 150334 34564880 ~ 34565952 (+) True G180201
TU244084 other upstream 155901 34557582 ~ 34560385 (+) True G180199
TU244008 other upstream 387973 34318593 ~ 34328313 (+) False slc25a46
TU244006 other upstream 387973 34318648 ~ 34328313 (+) False slc25a46
TU243872 other upstream 876899 33838192 ~ 33839387 (+) True G180043
TU244144 other downstream 3667 34807258 ~ 34814910 (+) True G180216
TU244245 other downstream 149473 34953064 ~ 34955966 (+) True G180268
TU244390 other downstream 1047331 35850922 ~ 36018072 (+) False G180366
TU244424 other downstream 1166175 35969766 ~ 35973061 (+) True G180382
TU244438 other downstream 1254715 36058306 ~ 36058736 (+) False LOC120545305

Expression Profile