RNA id: XM_039779566.1


Basic Information

Item Value
RNA id XM_039779566.1
length 2123
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC120545317
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 34571819 ~ 34948439 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agacagactgagagagGACGTGTGGACGAGAAGACTGAGAGCTCAGAGCTGCTGGACCTGCATCAACTAACAGTGTGATTTAAAGTCAGCTTCTTCATCTCTCTGAAGAGGAGATCTCAACACTTCAGGAGGACCAGGAGACCTTAAGATGTCTGCAAAACCAAGAACAGATAGCAAAGACCTCCCTCCTGATCTGTCTGAATTCATGGTCAAACTCAAAGAACATGCAGCTTCATTCATCAGAGAGTTTGACAGCAGTGAACACAGGATGACACAGATTGTTGGAGAGTTTAGGGAGATTGCTGATAAATTCCAAAAGAGGCAGGAGAGAACAGGTACAGTCAGAACAGCAGGAACTGTTGCTGGAGGAGTAGGAATAGGACTCCTGTTCCTTGCAGCTCCGCTCACTGGGGGGGCTAGtttagtagcagcagcagcaggagtagCTGcaacagcaggaggaggagctgtGCTTTATGgtgtaaatgaaacaaaaacaaggaaAGAGATCGAAagtgcaaagaaagaagaagagctgGGGAAAGACTTCATGATGATCGTTGAACGGATGAAGAAGGACCTGGAAGAAATAAAGAAGATGTGTGAGAAGTTGGAGCAAAGATCAGCTGAAGATCAGGCTGGAAACATTCTGACACACATGGAGGAGTTTCGGGGGATTCTGAGAGAAGTTTCTGGAGATAAAAGAGGAGAAATCCCCCATCTTTGTAGCAAGATGATTGAAGACTTTGAAAAGATGAAGAAAGAACTCAAAGCCTTCACAGAAAAATAAAGGAAGCAACATGCATTATTAACATCATTGACTTCAACCTGGATTGATATTATTATTCATATAATGTGGGTATTGCAAATCCTTTTATTTTTGGTTCCTTTAATAGTTCGGAAATGTTATCTTTTAAAATATGTGATCCAAAATTCAATCCAAATTGCTGTGTAATCATTTATTGCCACCTCCCTTATTCTAACACCTGTTTTCTTAATGAGTTTTCTGATTAACTATCCTTCCTTGTGCTTAAGTTTGATAGGGTCATTAAAGTTGGTGATTTTATAAAGATTGACAATCCTTCCAATCGATTCACTAttgactttttaaatgtatgtacagtaagtCTTTTAACCTTGTGCAGTATGTCTCTGGCCCATCACATAAGCATGGACACACCCTTAACCTATATCTAAAGGACTCTTTACAGTCGCTGCTCCCGACTTGTCGCAcgacaatgtaatgtaaaaatgacgtagatctcacTAGCACGCCAGGATTTTGAATGTGCGTCCATTTTTTTCAGCAGAGCGcaacaaacaggaaacagcaagCATGAACGAgttctctcttgtaaacttccTGGGTTAAGAGGAggtcttttatggtgaatgaaaggcctgatcccaccaagtagctcatccaatTGTTGTGCAGACATTCTGAAGTATTCAAAGTGCTTCTCTTCGTCTATCATCCTCATTTGTTTCACCAGGATATTGAACTCACCGTATTTATCTCAGCCGTTATTCAAAGGACGAACATCCCACCTTCTTCTTCGTCGTTTCTTTGCAAGCAGGCTCAAAAGCAGCTGTTCTTCCTCCTCCATTGACTCCAATATCATCTCAGCCACTGTTGACATTGTCGGGAATGGCGAGTATACCGCAATGTGATGACGAGAACAGAGTCTGTCTTTGTATCAGAGGATTCTGACACGAGTTTCTGAACTGGCAGGAAGGATTAAAGTAGTTTTGTCTGCAGCTGTAAAAGTGATGAGTTCTGTTCTGTTATTGCTCAATGTGAAATTCTTCAGAGTAACTGCGACCCCTGACGATTAGGAAAAGTTAGTAAACTCCATCATCCAGTCAGCTGATCTCTGTCAGGAGGTCGTTGTCAAGTTTGATCAGATGAAGGAAGAACTCAAAGACTTCAGTGTAAAGTAAAGATAGAAGCAGCAGGAGAAGAAAAAGGACTGGTTCACACTGAAACTGCTGACTACCTGTTAGtgtttaatcatttattttaccaaCTGGACTTTATGTAACTGAATCAGATGAACAATAATACTTTATGATATTTGATATGTTGGAATGTTGAATAATAAATCTCACTCACTGTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244127 lncRNA upstream 3964 34614460 ~ 34941011 (+) False G180212
TU244145 lncRNA upstream 31637 34904361 ~ 34913338 (+) True G180217
TU244142 lncRNA upstream 31813 34901029 ~ 34913162 (+) True G180215
TU244124 lncRNA upstream 32447 34614460 ~ 34912528 (+) False G180212
TU244198 lncRNA upstream 42147 34901991 ~ 34902828 (+) True G180257
TU244250 lncRNA downstream 9869 34958308 ~ 34958827 (+) True G180271
TU244252 lncRNA downstream 16598 34965037 ~ 34965484 (+) True G180273
TU244253 lncRNA downstream 17173 34965612 ~ 34968768 (+) True G180274
TU244259 lncRNA downstream 38711 34987150 ~ 34987669 (+) True G180278
TU244261 lncRNA downstream 42688 34991127 ~ 35022075 (+) True G180280
XM_039779578.1 mRNA upstream 93371 34850601 ~ 34851604 (+) True si:ch211-202f5.2
XM_039779491.1 mRNA upstream 147797 34777854 ~ 34797178 (+) True fktn
XM_039779456.1 mRNA upstream 589619 34332321 ~ 34355356 (+) True wdr36
XM_039779485.1 mRNA upstream 615712 34318618 ~ 34329263 (+) True slc25a46
XM_039779572.1 mRNA upstream 636997 34300493 ~ 34307978 (+) True slc31a1
XM_039779455.1 mRNA downstream 38231 34986670 ~ 35023782 (+) True LOC120545265
XM_039779470.1 mRNA downstream 186032 35134471 ~ 35143485 (+) True LOC120545273
XM_039779469.1 mRNA downstream 256642 35205081 ~ 35232148 (+) True LOC120545272
XM_039779472.1 mRNA downstream 311757 35260196 ~ 35608119 (+) False LOC120545274
XM_039779473.1 mRNA downstream 318798 35267237 ~ 35608119 (+) True LOC120545274
TU244144 other upstream 130065 34807258 ~ 34814910 (+) True G180216
TU244135 other upstream 141384 34716286 ~ 34803591 (+) False G180213
TU244088 other upstream 379023 34564880 ~ 34565952 (+) True G180201
TU244084 other upstream 384590 34557582 ~ 34560385 (+) True G180199
TU244006 other upstream 616662 34318648 ~ 34328313 (+) False slc25a46
TU244245 other downstream 4625 34953064 ~ 34955966 (+) True G180268
TU244390 other downstream 902483 35850922 ~ 36018072 (+) False G180366
TU244424 other downstream 1021327 35969766 ~ 35973061 (+) True G180382
TU244438 other downstream 1109867 36058306 ~ 36058736 (+) False LOC120545305
TU244460 other downstream 1174641 36123080 ~ 36125385 (+) False G180410

Expression Profile