RNA id: TU244144


Basic Information

Item Value
RNA id TU244144
length 1837
RNA type TUCP
GC content 0.48
exon number 3
gene id G180216
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 34807258 ~ 34814910 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATgcgagagagggaggagggagagagacagacagagagagagagagagagagagagggagagatcgaacagagaggagggaggagcgagaGAATGAACAGAGGAGGGAGTGTCAGCAGGTAGAACAGGTTTGGGGAGAGGCGTCTCAGTGAGAGAGTCAGATTTACAGACTTCAGTTTGACTCGGAGTCGtagaaacagaaaacacacaacaggacgagaagaaagagaaaacagacaacaggacgagaagaaagagaaaacagacagcaggacgagaagaaagagaaaacagacaACAGGACGAGAAGTTTGGGTTTTTCTTTCGAGAAACGACAGattgaaagaaaagaagagaagaaaaggtgactgtAAGCAGCTGTGAACAGAGCTCTCTCCTGATTGGACGGCTGCCCGATTGGTTGATCTCCTTTAAGCCCCGCCCTCCTGTGACTCACCACCATGTCATCAAACATCAAAGTCTCCCTGGAGAACCCGTACGGCGAGGTGACCATCCCGCGGGCTAAGCTCCGCCCCTCCGACGGCGGCGCCACGGTGATAGCCAATCCCGGCGCTCTGAGCGGCGAGAACCCGTACGGCGTGTCAAGCCCCGCCCCCTCGCCGTACGTGGTGAAGGAGGCGccggtggaggaggagggggggagccGCGCCTGCTGCTACCGCTGCCGGaggaggaagtgatgtcacagcCACACCCGGaggaggaagtgatgtcacagcCACACCCGGaggaggaagtgatgtcacagcTGCACCCGGaggaggaagtgatgtcacagcCGCACCTTTCACCGAGGAAACGAGGAAGAGAAGAACGATTATTGAATGATATATAGAACCcttactactactattattattattattattattattattaatcatctGTTAAATGATATTAATAGGCACAAAATGGCCGCTGCTGATGCTGAGAACTGAGAACTAACACGGACAGAAAGATTGGAGCATTTCCATATGTGCTGTTGCCATGGCAGCAGACTCACCTGAGCTGAACCCCCCCTCATTTACATAAAGTCGtctggattcaactttatgcaaatgaggagcgtgAAAGTCACCGTgatgctcccagaatgcattgcccgGCTGCTCCCTGAGACCAACAGCAGCCGGTTGGTCAGACACCAAAAGGTCTCGTTAAGTTCAGACACCAAAAGGTCTCGTTAAGTTCAGACACCAAAAGGTCTCGTTAAGGTTAAGTTCAGACACCAAAAGGTCTCGTTAAGGTCAGACACCAAAAGGTCTCGTTAAGGTTAAGTTCAGACACCAAAAGGTCTCGTTAAGGTCAGACACCAAAAGGTCTCGTTAAGGTCAGACACCAAAAGGTCTCGTTAAGATCAGACACCAAAAGGACTCGTTAAGTTCAGACACCAAAAGGTCTCGTTAAGGTCAGACACCAAAAGGTCTCGTTAAGGTCAGACACCAAAAGGTCTCGTTAAGGTTAAGTTCAGACACCAAAAGGTCTCGTTAAGGTCAGACACCAAAAGGTCTCGTTAAGTTCAGACACCAAAAGGTCTCGTTAAGGTCAGACACCAAAAGGTCTTGTTAAGTTCAGACACCAAAAGGTCTTGTTAAGTTCAGACACCAAAAGGTCTCGTTAAGGTCAGACACCAAAAGGACTCGTTAAGTTTctctatatgtgcgcctgctccaccACTGAATCAACCCGGCCACGGTCAGACGACCTTCCTATTGGTGTTATTCTGATGGATCAAAGAGTAAATATAttgattattaattaataacatTAAGTTTTTATAAGTACCTGAGTATCATAGCTAGTATTCTGCTGACGAA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG:

id description
ko04514 Cell adhesion molecules
ko04670 Leukocyte transendothelial migration
ko05160 Hepatitis C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244138 lncRNA upstream 3508 34716286 ~ 34803750 (+) False G180213
TU244136 lncRNA upstream 3667 34800607 ~ 34803591 (+) False G180213
TU244137 lncRNA upstream 3667 34800607 ~ 34803591 (+) False G180213
TU244139 lncRNA upstream 3667 34800607 ~ 34803591 (+) False G180213
TU244140 lncRNA upstream 3667 34800607 ~ 34803591 (+) True G180213
TU244134 lncRNA downstream 9260 34824170 ~ 34870769 (+) False G180212
TU244188 lncRNA downstream 16673 34831583 ~ 34832109 (+) True G180249
TU244130 lncRNA downstream 40248 34855158 ~ 34858324 (+) True G180212
TU244147 lncRNA downstream 55438 34870348 ~ 34896644 (+) True G180219
TU244142 lncRNA downstream 86119 34901029 ~ 34913162 (+) True G180215
XM_039779491.1 mRNA upstream 10080 34777854 ~ 34797178 (+) True fktn
XM_039779456.1 mRNA upstream 451902 34332321 ~ 34355356 (+) True wdr36
XM_039779485.1 mRNA upstream 477995 34318618 ~ 34329263 (+) True slc25a46
XM_039779572.1 mRNA upstream 499280 34300493 ~ 34307978 (+) True slc31a1
XM_039779571.1 mRNA upstream 499280 34302660 ~ 34307978 (+) False slc31a1
XM_039779578.1 mRNA downstream 35691 34850601 ~ 34851604 (+) True si:ch211-202f5.2
XM_039779566.1 mRNA downstream 130065 34944975 ~ 34948439 (+) False LOC120545317
XM_039779455.1 mRNA downstream 171760 34986670 ~ 35023782 (+) True LOC120545265
XM_039779470.1 mRNA downstream 319561 35134471 ~ 35143485 (+) True LOC120545273
XM_039779469.1 mRNA downstream 390171 35205081 ~ 35232148 (+) True LOC120545272
TU244135 other upstream 3667 34716286 ~ 34803591 (+) False G180213
TU244088 other upstream 241306 34564880 ~ 34565952 (+) True G180201
TU244084 other upstream 246873 34557582 ~ 34560385 (+) True G180199
TU244008 other upstream 478945 34318593 ~ 34328313 (+) False slc25a46
TU244006 other upstream 478945 34318648 ~ 34328313 (+) False slc25a46
TU244245 other downstream 138154 34953064 ~ 34955966 (+) True G180268
TU244390 other downstream 1036012 35850922 ~ 36018072 (+) False G180366
TU244424 other downstream 1154856 35969766 ~ 35973061 (+) True G180382
TU244438 other downstream 1243396 36058306 ~ 36058736 (+) False LOC120545305
TU244460 other downstream 1308170 36123080 ~ 36125385 (+) False G180410

Expression Profile