RNA id: TU244137


Basic Information

Item Value
RNA id TU244137
length 2377
lncRNA type intronic
GC content 0.41
exon number 4
gene id G180213
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 34716286 ~ 34803750 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tattgcactagtccatatagtgatttggatattgcactagtccatattctgatttggatattgcactagtccatatagtgatttggatattgcactagtccatatagtgatttggatattgcactagtccatatagtgatttggatattgcactagtccatatagtgatttggatattgcactagtccatatagTGATTTGaataaaattgtgattaattgtgcagccctacccagtggccattattattatcattattatgatAATAATATGCTAAGTTTTAGGAGCCATTGCTTCCCTTTCAACAAAATGTAGTCAGTAGGATGGGATGTGTAGTCTGTAGTCAGTAGGATGGGATGTGTAGTCTGTAGTCAGTAGGATGTAGTCAGTAGGATGGGATGTGTAGTCTGTAGTCAGTAGGATGTAGTCAGTAGGATGGGATGtgtagtcTGTAGTCAGTAGGATGGGATGTGTAGTCAGTAGGATGGGATTTGTAGTCAGTAGGATGGGATTTGTAGTCCAGGATATTCAGAACGGTTGGACACGTTTGCCTCTAATAAATATTGCACCCCTCTTGTGATATTTCCCCGACctgtgatttggatattgcactagtccatatagtgatttggatattgcactagtccatattctgatttggatattgcactagtccatatagtgatttggatattgcactagtccatatagtgatttggatattgcactagtccatattctgatttggatattgcactactAGTCCATATagtgatttggatattgcactagtccatatagtgatttggatattgcactagtccatatagtgatttggatattgcactagtccatattctgatttggatattgcactagtccatatagtgatttggatattgcactagtccatatagTGATTTGGATATTTCACTAGTCCATATagtgatttggatattgcactactAGTCCATATagtgatttggatattgcactagtccatattctGATTTGGATAAAATtctgattaattgtgcagccctacccagcggccattattattatcattattatgatAATAATATGCTAAGTTTTAGGAGCCATTGCTTCGCTGTCCTCGTGAACTGAAGAGTACGATCTGTGCTCGGCAGATATGACTTGACCCTGACGCCATAGTTTTAGGTTTTCTCCGTCAGGTATGTTCGCCGCTGCTGTCAAAcctgtttgttttaaataaagttttttgtgATTCAGGTATGTGTTCCCGCCCTTCTCTCTGTGCTGGGCGGAGCTTCTGGAGCTGAAGGTTCGAGTCCCGTGTGAAACGCTCGACTACGTGACGGCAAACTACGGCGCGGCCTGGAACGTCCCGGTGAGGAGCTGGGACTGGAAGACGTCGCCTAGCAACGTGCAGGAAAACGGGGTGTGGCCTCCAGCAGAGTGGGCGGAGCTTATCCAAGTTTACTGACACTCAAAACTACAAATAAAGACATGGAACTACAAATAAAGATATGGAACTACAAATAAAGAAACTACAAATAAAGAGAAAGTGGAAAGAGACACGCTGATGTTTTTGAGTGCTGAGATCCTGAGACCGCGATGTTTACGCCTCCCTCCGTGCACACGCCCCTCCCCGCACACTCTTCCCTCCGTGCACACACCTCCCTCCTGCACACTCTTCCCTCCGTGCAcgcgcccccccccccgagactatttagaggccctgtggctccgtccggagcttagccccacccacgatgattgtgattggtttaaagaaatgctgataaaccagagcatgttgttctatcccagaatgcatctgtggtgtagtcTCGGGCACGTTGAGCGTCTGAACGGTGTGCAGcgtgttgctatggttaccgTGTTGTCTCTGTGACCACGGTGTCTGTAAACAGATTATTTAATTCTGAGTTCAGTAGGAAACTGGTAGCTGATGATTAAAGTGctgtaactgtgtaataacatgATAACGAGATATAAAAAGCTTACCAGCTGTTATTATCAGATTATAACACGTTAGTTTCTAAATGTGTGAAAGGAAATCAAAGgtttatatatttaatgaacTAAAACTCTCTTTCTCCTGTAGTCCTGAAACCAAACCTggacctgtttttattttgctgcTTCACAACAAACtgacacattattattattattattatttaaatgttatgtttatttcagctgttttcagacatattttattatattgtattataattCTTCTGTTCCAACATCTCTCTTCAGCAAATGGggcaattataaaaaatatctgAGTTCAGTTTATTCCACCAGACTCTGGTCATCACTTTTACTCACACGGTTATTGTATTACCAAATAAAACCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244181 lncRNA upstream 27064 34750835 ~ 34773543 (+) True G180243
TU244182 lncRNA upstream 44554 34755637 ~ 34756053 (+) True G180244
TU244146 lncRNA upstream 63162 34736968 ~ 34737445 (+) True G180218
TU244153 lncRNA upstream 144935 34651754 ~ 34655672 (+) True G180224
TU244105 lncRNA upstream 173065 34620273 ~ 34627542 (+) False G180205
TU244185 lncRNA downstream 2434 34806025 ~ 34848183 (+) True G180246
TU244134 lncRNA downstream 20579 34824170 ~ 34870769 (+) False G180212
TU244188 lncRNA downstream 27992 34831583 ~ 34832109 (+) True G180249
TU244130 lncRNA downstream 51567 34855158 ~ 34858324 (+) True G180212
TU244147 lncRNA downstream 66757 34870348 ~ 34896644 (+) True G180219
XM_039779491.1 mRNA upstream 3429 34777854 ~ 34797178 (+) True fktn
XM_039779456.1 mRNA upstream 445251 34332321 ~ 34355356 (+) True wdr36
XM_039779485.1 mRNA upstream 471344 34318618 ~ 34329263 (+) True slc25a46
XM_039779572.1 mRNA upstream 492629 34300493 ~ 34307978 (+) True slc31a1
XM_039779578.1 mRNA downstream 47010 34850601 ~ 34851604 (+) True si:ch211-202f5.2
XM_039779566.1 mRNA downstream 141384 34944975 ~ 34948439 (+) False LOC120545317
XM_039779455.1 mRNA downstream 183079 34986670 ~ 35023782 (+) True LOC120545265
XM_039779470.1 mRNA downstream 330880 35134471 ~ 35143485 (+) True LOC120545273
XM_039779469.1 mRNA downstream 401490 35205081 ~ 35232148 (+) True LOC120545272
TU244088 other upstream 234655 34564880 ~ 34565952 (+) True G180201
TU244084 other upstream 240222 34557582 ~ 34560385 (+) True G180199
TU244008 other upstream 472294 34318593 ~ 34328313 (+) False slc25a46
TU244006 other upstream 472294 34318648 ~ 34328313 (+) False slc25a46
TU243872 other upstream 961220 33838192 ~ 33839387 (+) True G180043
TU244144 other downstream 3667 34807258 ~ 34814910 (+) True G180216
TU244245 other downstream 149473 34953064 ~ 34955966 (+) True G180268
TU244390 other downstream 1047331 35850922 ~ 36018072 (+) False G180366
TU244424 other downstream 1166175 35969766 ~ 35973061 (+) True G180382
TU244438 other downstream 1254715 36058306 ~ 36058736 (+) False LOC120545305

Expression Profile