RNA id: TU244108


Basic Information

Item Value
RNA id TU244108
length 7084
lncRNA type intronic
GC content 0.44
exon number 3
gene id G180205
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 34620273 ~ 34627542 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTAACATACTGAAGCTAAGCTACCATGCTAAGAGGTTGAAGCaaagctaacatgctaacaggtTGAAGTTAAGCTACCATGCTAACAGGTTGAAGTTAAGCTACCATGCTAACAGGTTGAAGCTAAGCTAACATGTTTGTGACTCACCCCGTTGAGAAAAACATCTCGTCTCATGCCGGAGAATcgtctgaaaaaaaacaacaaagttgAAAAAAGCTCTTTATTTCAATAAAGGATCTCTGGAATAGTGATACTATTTTGAAAgctttcaaaagaaaaagagcTTTGTGTTAAATCTTAATATAAAACCAAACAGCTGAACAGGTATGTTCCGTTATTTTggctttaaattaaaaatgtctgTGCCCCGCCTACTCCACATGGACCCCGCCTACTCCACATGGACCCCGCCTACTCCACATGGACCCCGCCTACTCCACATAACCCCTACATACTCCACATAACCCCTACATACTTCATATAACCCCTACATACTTCACATAGCCACCACATACTTCACATAGCCACCACATACTTCACATAGCCACCACATACTTCACATAGCCCCTACATACTTTACATAGCCACCACATACTTCATATAACCCCTACATACTTCACATAGCCACCACATACTTCACATAGCCACCACATACTTCACATAGCCCCTACATACTTTACATAGCCCCTACATACTTTACATAGCCCCTACATACTTTACATAGCCACCACATACTTCATATAACCCCTACATACTTCACATAGCCACCACATACTTCACATAGCCACCACATACTTTACATAGCCACCACATACTTCATATAACCCCTACATACTTCACATAGCCACCACATACTTCACATAGCCACCACATACTTTACATAGCCACCACATACTTCATATAACCCCTACATACTTTACATAGCCACCACATACTTCATATAACCCCTCATACTTCACATAGCCCCTACATACTTCACATAGCCCCTACATACTTCACATAGCCCCTACATACTTCACATAGCCCCTACATACTTCACATGGCCCCTACATACTTCATATAACCCCTCAAACTTCACATGGCCCCTACATACTTCACATAGCCCCTACATACTTCATATAACCCCTCATACTTCACATAGCCCCTACATACTTCACATAGCCCCTACATACTTCACATAAACCCTACATACTTCACATAGCCCCTACATACTTCACATAGCCCCTACATACTTCACATAGCCCCTACATACTTCATATAGCCCCTACATACTTCACATAAACCCTACATACTTCACATAGCCCCTACATACTTCACATAGCCCCTACATACTTCACATAAACCCTACACACTTCACATAGCCCCTACATACTTCACATAAACCCTACACACTTCACATAGCCCCTACATACTTCACATAGCCACCACATACTTCACATAGCCACCACATACTTCACATAGCCACCACATACTTCACATAGCCACCACATACTTCACATAGCCACCACATACTTCACATAGCCCCTACATACTTTACATAGCCACCACATACTTCATATAACCCCTACATACTTTACATAGCCACCACATACTTCATATAACCCCTATATACTTCACATAGCCACCACATACTTCACATAGCCACCACATACTTCACATAGCCACCACATACTTCACATAGCGACCACATACTTCACATAGCCCCTACATACTTTATATAGCCACCACATACTTCACATAGCCACCACATACTTCACATAGCGACCACATACTTCACATAGCCACCACATACTTCATATAACCCCTCATACTTTACATAGCCACCACATACTTTACATAGCCCCTACATACTTCACATAGCCCCTACATACTTCACATAGCCCCTACATACTTCACATAGCCCCTACATACTACATAGCCCCTACATACTTCACATAGCCCCTACATACTTCACATAGCCCCTACATACTTCACATAGCCCCTACATACTTCACATAGCCCCTACATACTTCATATAACCCCTCATACTTCACATAAACCCTACATACTTTACATAGCCCCTACATACTTCATATAACCCCTCATACTTTACTTAGCCCCTACATACTTCACATAGCCCTGCCTATTTCACATAGCCCTGCCTACTTCCTGTTTCAGGTGAGTGATGGCGTGCGTCTCACCTGTCCACCGGCTGGTTACGAAGGTCCTGGATGAATCCTGAAGATAAAATAAATTCTTACGTTACATTTTACTTTTCAGACGGTTTGTCCGTCAGCTGGCGAGAAGTTCAGAGTTACagttaaagagaaagaaaagtccAATAAAAACTCATTCTCAACACAATAACtgtttaaataaagtaaattacacttcataaagataaaaaaactttaaaaagtacCTAAAAAATAAGTCATATACAACTAAAAGTAACTACTGTTGACAGACTTATGCTGCGTCATCGTTAGTGTACAGACTTCTGCTGAGTCATTGCTAGTTTACAGACTTATGCTGAGACATCGATAGTTCGCAGATTTATGCTGAGTCATCGTTACAGTGTACAGACTTATGCTGAGTCATGCTGAGTCATCGTTAGTGTACAGATTTATGCTGACTCATGGTTACAGTTTACAGACTTATGCTGACTCATCGTTACACTGTACAGACTTATGCTGAGTCATCGTTACACTGTACAGACTTATGCTGAGTCATGCTGAGTCATCGTTACACTGTACAGACTTATGCTGAGTCATCGTTACAGTGTACAGATTAATGCTGAGTCATCGTTACAGTTTTAAGGACCTGCTCGCTGGTTGAAGTCTGGCGGACCATCGGCCCGCGGCCGCTTCCTGCCGTGGAGGTCGTACTCTTCAGGGCGACGCCTACGCAAAAAGTTCACAGttaagacacacatacacacacacacacatactcacacacactaatacacactcgtgcacacacacactcacacatacacactcgtgtgcacacacacacacacacacacacacacacacacacacacacacactcgtacacacacacacacacacacacctgtagcgATGTGTCGATGACGTCAAAATTACGTCAACGTCATATTTTCGCGTCGCCGCTTCGGCACAAACGTGGAAGACCAAAACATCGCTGAATGGAGAACGAAACCCCAACCTCCGCACATAATTCCCAACAAAGccccaataaaataaaaagtcctAAAGAACAGCTCGCCCTAAATCATCGAAGGTATGGGAATACTTCAGATTTAGTCCCAAACGTAAAAGGTGTCGTTATTTGCGCTCTTTGCCAAATGGAGTTGGCGTCCCACACCAGCACCGCGGGAGCATCGTAAACAGAGGAACCCCATCGTCACTCGTGAAGGAAACAATAACAAGTAGTAACGATGGCTAAATTAATTTCATGTTTGcgtagtgtgttgtgttgtgttgcttgAGCTCTGCGCACTTCGGTGGTGCTAGGCTGgtgctaggttagtagctaacgttagctaacgtgaaCGTTAGCTACTGGCGCCTAGACAGCtgtgtttagctaacgttagttattaTCTAATGTTGGCTTGAATCGTAGCTAGCTTACGGCTGCAGAACACAGCTATctatagtagctaacgttagctaacatgaacgttagctactaacctagcaTGAACAAACTGCACAGAGAGCTAAGATGCGTTGGTTAGCCTTGCACCACCAAAGAGCACAGCTGCTAGCtctagctaacggtagcaaGCAGATTGCAGTAGCTTTGTACAGGAGAGAGTGATGTTGGgactgtaaaactgaaaacagggattttatgttgtgttaaacACTCTCAGGAATGTCTATACTGCACGGTATTTTTTTGCACtacaactttttaattttttagagTTAGGAGAGAGTTATGTTGGAACTGTAAAAGAGTAAACAGGCTGGCCTTTCATTTtgtataacagtaaaataattgtatttattttattttgtttaaagcAGAAGATTTTCTGCTGTACAAAACTGTTTGATAAAGTATATTAAGATTTTTTGGGGGTATTTATTTGATAcattatagtttttattaatcgaGGAACCGAAAAATAAAtgttagattaatcgtctaatTAGTCGTTGGATTAGTCGACTGTGCCGATTGTTTGATAAATAATCGTTTACCCCCAGCcctaacacacagagacacacacacattaatacacacacacacacacacacacacacacacacattaatacacattaaaacagtcagagaaaacacattttaaacaggaaaaaaactgaACTTCACCAAAATTGTTAAAATCTTGCGATGGGACAGATTTACTCTGAAGGTGCAGCCTTCCAGGTtctgacatcacttcctgtctctATTTAAGTCTACAGGGGCtctgacatcacttcctgtctctGTTTAGAGTCTGCATGTCCCTTTCCGTTACGGAGATGGTAGCCACGCCCCTCTGGGAAGATATATGCAAACGCTTTGAGCTAACCGAAACGTTTCTTAGCTTAAATGTCAAATGTAAGAATGTCTTACATAAATGTCTCGTATGAATTAAATTATAATATTCATGAATAACCAGTGTTCAGGGCGCCGCTGGAGACGGGTTAATGCCTGACCCACCGCGCCGATAATCagccgtctgacagtctggcgaggtcggtgactcgaggcTGTTCGGTGTGTCGTCTGACAACCTGACTCgctgggtcggagggcgggcagtcgcactcaatgaccaatctgattggtggagagctaacccggaaatgagatgagcgtgactagtctctcaaaatctaactaaaatcttttaaaggtgccctgccacacaaagccgtttttacttgtatttttctaaatattttttcagtgtgttatgtggtgaaggtgaaaatgaactgctacctcctctgtcagctctaagaggagaaatcagaccaatcacaacagctggtcagtctgacatcatactgcctgagctcattactattcatgagctcgcccagttgggctgggtaaaggatgctgacagccaagctctcattggctagctgttagccaatcagagtcaaacagcttagcttgttgaatattaatgagaactggcagaaatcgagctgagtattcctgcaggctttctaaaccgcgctagaatggcttgaaacaaggtaaccaaggttacagagtccatggtagaccttcagaGATCACCACAAAGTCAGGAAATacacgtgtggcagggcacctttaaactgacctttgttgattcagcaactgcacggcctatttctctgttaaaatgatttcagaaacacgtttcggtgaactattttagtccaatatgacaTCTGATTCTGAACGAGCAGCCATGATGGTCtaggagcagccagacccacatgacGCGTTCTTCAATACCGGTTTTCATTGcttgtattacgtctcgcgcacgcgcagaacgtacgctcaagtaggcgtctctttggtgtgttctgaggcactttttggaccccggggagactgatcagtccgtcTGGTTGGTGGGTTAGGGCCTTTAAAGAGGCGCAGGCTGCTGGCCCCTGAGCTACAGCTACTGATCCTGCTGTCTGCTGGTTCTGCTGGTCCTGCTCTCTGCTGGTTCCTCTGCTGTCTGCTGGTTCTGTCTAACAGCGTTGTCCTTGGCTTGGCGCGTTCACACTGGCATTGGGCTATTCGTGGTTAACGGCGTTCCCCGGCGCTGTAGAGCTGTACTAGGGCAGCACGATATGAGGCAATATCTAACGGagattatttttgactgatattgcgattgcgttATGATTCACGGCATTGAAGGGAATGATTATTTTTgtgtcattattctcattttcagattcagcaactgcacggcctatttctctgttaaaatgttttcagaaacacgtttcggtgaactactttagtccaatatgagatcagattctgaacCAGCCGCCacgacagtctggctttgagtttctggagaaaccagacccgCGTGACGatttcgtccaatcagctgccggttttcattttttgagcGACAccacagattagcgccgcctgttgctatggagacgtattaggtctcgtctcttcggtgttctgaggaactttctgGACCAACTCGGAGAGACTGATCAGTCTGCGTCTCCCTCTTCACCTTCTCGCGTGGTAAAGTTTTTCTTAATCGGACTCGAGACTCTGGGGGTCGATGACGTCATACGTCTGGAAGCGCTCGGACACAAACCTGTGATTTTGGTGTACGTCTGTGTCCAGGAAGTACTTCACTGTCTCACGGTTACAGCAGCATTGACACATTtagcttcacacacacaataaaaacaacaaacaaagaagaagaagcctcTGAAAGGGACAACATACCGCTCTTCTGCTGTAAATGTGGGAGGGGCTGTAAATGTGGGAGGGGCTGTAACTTTTGATTTTAACAACAGTTTTTCTCCTCATCAGTCCATGTTTAAGGCTTTTTATAACCCCTCTTACTTTGAAAGGGTGTGGAGGgggtgatgatgatggtgatgatggtgCAGTCCtgccaaccaaccaaccaagcctctcccccaccccctctcagaccagccccccccaccccctccagaCCAGCAACAGTCCTTAAATCTCAAACCACAAAAACGTCTTTCTGCCGCTCCGTCCGTTCGAGTCTCcctttacttttgtttttctttcctcacacacacacttttattttcagttCATAAGAGAGAGcagcacgcacacgcacacacacgtacaaacaccacacacacacacacacacacaccacacacacatacaccacacacacacacgtacaaacaccacacacacacacacacacacaccacacacacatacaccacacgcacacacacacacacacacacacgcacaaacacacacacacacacacacacacacacctcacacacatacaccacacgcacacacacacacacacacacacacacacacacacagtcacgcataaacaccacaaacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244150 lncRNA upstream 3185 34615613 ~ 34617088 (+) True G180221
TU244095 lncRNA upstream 8970 34591009 ~ 34611303 (+) False G180203
TU244097 lncRNA upstream 8970 34599895 ~ 34611303 (+) False G180203
TU244093 lncRNA upstream 9462 34578993 ~ 34610811 (+) False G180202
TU244153 lncRNA downstream 24212 34651754 ~ 34655672 (+) True G180224
TU244138 lncRNA downstream 88744 34716286 ~ 34803750 (+) False G180213
TU244146 lncRNA downstream 109426 34736968 ~ 34737445 (+) True G180218
TU244181 lncRNA downstream 123293 34750835 ~ 34773543 (+) True G180243
TU244182 lncRNA downstream 128095 34755637 ~ 34756053 (+) True G180244
XM_039779456.1 mRNA upstream 264917 34332321 ~ 34355356 (+) True wdr36
XM_039779485.1 mRNA upstream 291010 34318618 ~ 34329263 (+) True slc25a46
XM_039779572.1 mRNA upstream 312295 34300493 ~ 34307978 (+) True slc31a1
XM_039779571.1 mRNA upstream 312295 34302660 ~ 34307978 (+) False slc31a1
XM_039779453.1 mRNA upstream 573649 33997414 ~ 34046624 (+) False LOC120545262
XM_039779491.1 mRNA downstream 150312 34777854 ~ 34797178 (+) True fktn
XM_039779578.1 mRNA downstream 223059 34850601 ~ 34851604 (+) True si:ch211-202f5.2
XM_039779566.1 mRNA downstream 317433 34944975 ~ 34948439 (+) False LOC120545317
XM_039779455.1 mRNA downstream 359128 34986670 ~ 35023782 (+) True LOC120545265
XM_039779470.1 mRNA downstream 506929 35134471 ~ 35143485 (+) True LOC120545273
TU244088 other upstream 54321 34564880 ~ 34565952 (+) True G180201
TU244084 other upstream 59888 34557582 ~ 34560385 (+) True G180199
TU244008 other upstream 291960 34318593 ~ 34328313 (+) False slc25a46
TU244006 other upstream 291960 34318648 ~ 34328313 (+) False slc25a46
TU243872 other upstream 780886 33838192 ~ 33839387 (+) True G180043
TU244135 other downstream 88744 34716286 ~ 34803591 (+) False G180213
TU244144 other downstream 179716 34807258 ~ 34814910 (+) True G180216
TU244245 other downstream 325522 34953064 ~ 34955966 (+) True G180268
TU244390 other downstream 1223380 35850922 ~ 36018072 (+) False G180366
TU244424 other downstream 1342224 35969766 ~ 35973061 (+) True G180382

Expression Profile