RNA id: TU244039


Basic Information

Item Value
RNA id TU244039
length 383
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G180163
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 34310611 ~ 34311279 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acagtctgacctgatcacattcatactggaagctgcccagtaccaccacagtctgacctgatcacattcatactggaagctgcccagtaccaccacagtctgatctgaccacattcatacctggaagctgcccagtaccaccacagtctgatctgatcacattcatacctggaagctgcccagtaccaccacagtctgatctgatcacattcatactggaagctgcccagtaccaccacagtctgacctgatcacattcatactggaagctgcccagtacaaccacagtctgatctgctgccactgagcagctccactggagcggttggggttaagggccttgctcaagggcacctcagtggtagTGATGAGGGAGTCcaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244017 lncRNA upstream 1817 34282844 ~ 34308794 (+) False slc31a1
TU244036 lncRNA upstream 14064 34294914 ~ 34296547 (+) True G180160
TU244035 lncRNA upstream 48433 34258173 ~ 34262178 (+) True G180159
XR_005636676.1 lncRNA upstream 99126 34209549 ~ 34211485 (+) True LOC120545350
XR_005636673.1 lncRNA upstream 104757 34198447 ~ 34205854 (+) False LOC120545347
TU244045 lncRNA downstream 32014 34343293 ~ 34346498 (+) False G180166
TU244046 lncRNA downstream 32014 34343293 ~ 34348784 (+) True G180166
TU244048 lncRNA downstream 32014 34343293 ~ 34348784 (+) False G180166
TU244047 lncRNA downstream 35057 34346336 ~ 34348784 (+) False G180166
TU244042 lncRNA downstream 36907 34348186 ~ 34348784 (+) False G180166
XM_039779572.1 mRNA upstream 2633 34300493 ~ 34307978 (+) True slc31a1
XM_039779571.1 mRNA upstream 2633 34302660 ~ 34307978 (+) False slc31a1
XM_039779452.1 mRNA upstream 263987 33997411 ~ 34046624 (+) True LOC120545262
XM_039779453.1 mRNA upstream 263987 33997414 ~ 34046624 (+) False LOC120545262
XM_039779451.1 mRNA upstream 361360 33936243 ~ 33949251 (+) True LOC120545261
XM_039779485.1 mRNA downstream 7339 34318618 ~ 34329263 (+) True slc25a46
XM_039779456.1 mRNA downstream 21042 34332321 ~ 34355356 (+) True wdr36
XM_039779567.1 mRNA downstream 260540 34571819 ~ 34948439 (+) True LOC120545317
XM_039779491.1 mRNA downstream 466575 34777854 ~ 34797178 (+) True fktn
XM_039779578.1 mRNA downstream 539322 34850601 ~ 34851604 (+) True si:ch211-202f5.2
TU243872 other upstream 471224 33838192 ~ 33839387 (+) True G180043
TU243867 other upstream 485273 33824342 ~ 33825338 (+) False G180040
TU243868 other upstream 485273 33824342 ~ 33825338 (+) True G180040
XR_005636627.1 other upstream 566083 33708727 ~ 33744528 (+) False dmtn
TU243809 other upstream 1037400 33270996 ~ 33273211 (+) False G179997
TU244008 other downstream 7314 34318593 ~ 34328313 (+) False slc25a46
TU244006 other downstream 7369 34318648 ~ 34328313 (+) False slc25a46
TU244084 other downstream 246303 34557582 ~ 34560385 (+) True G180199
TU244088 other downstream 253601 34564880 ~ 34565952 (+) True G180201
TU244135 other downstream 405007 34716286 ~ 34803591 (+) False G180213

Expression Profile