G183540 (sf3b6,pm14,SF3B6)


Basic Information

Item Value
gene id G183540
gene name sf3b6,pm14,SF3B6
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10622736 ~ 10666472 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU248548
TTTAAGAAAAGGgacatttattttacagaaaccATACACTTGAGATAGTGTGTACTGATCAACTCAAtttcatatcacacacacacactgcatgacCACGGTTAGCTTTAAATTAAGGTAAGATTGTGGAAGTATGAAAAgattaacaaaaaacaaacaaaaaaaaaacagcgaaACGTGACATGCTCAGAGATTTCAACATCTTGCCCAGGGTGAGTACTGTGACCAGTCACCATCTAAATCTAGTTTTAAGAGTTTGTCCCGCTGGTCAACCACTTTGACAGGATCATCAACCAAACAGAGGAGTGAACAGCTCCCTGCCCTGATGTTAACTCACATACTGCCCGTCTAAACGGTGTTCAACTTCACGCATATTTGctgatggaaataaaaaaaaatcgtcttaatttcatttaaaaaaaaaagagagagaatatttTCAACATCTGTATCTGTGACACCAGCATAAAACCAAGGAACCTGGGAGGTTTGTATGGACAGAGAAAGATTCTGAACATGGAGGCGAGAGGCGTGGAGGTGGATGAACGCTACTTTGGAGGGTCTGTGTTGATGCCGTATTTCTCTTTTAGAAGCTTCAGctgttcctctttcttttttgtgtccATCTTCTGGAAAGCTCTGTTTGCGTTGTAGTAGAGGACCACCAGGTAACGGTTGCAGACGTTGAAGCCTGACAGATGGTCGCAGGCGTTCTTGGCGTCAAAGATGTCTTCATAAACCACGTAAGCCGTTCCTCTCGATTCAGGTGTGTTGCCTCTGAGAAGTGACAAAGAGCAAAATACACCAGAAGTGACTACGAAACCAACATGTGCAGAGTCCCGCAGGTCTTTAGGCTAAGGGGAAGGTAAGGTGTACAAGCCACACAAAAAGAACACATTTTAATGGAACCAAAGCGGAACCCCTGTCGGCTGAGTTGCTGCGTTTGATTGGGGGTATTGGCTTTATCCAAGCACTTCACATCCGGCGTGCCAGACTACTCTGCTGCTGCTTAGATGTCacacaaaaagtgaaaaactagttgttgtttttttaaagaaaatgtgtaaACAGGATTATaatatttcatttattaaagtgatggttcgga
>TU248549
gtgtgtgtgtgtgggACTGATCAACTCAAtttcatatcacacacacacactgcatgacCACGGTTAGCTTTAAATTAAGGTAAGATTGTGGAAGTATGAAAAgattaacaaaaaacaaacaaaaaaaaaacagcgaaACGTGACATGCTCAGAGATTTCAACATCTTGCCCAGGGTGAGTACTGTGACCAGTCACCATCTAAATCTAGTTTTAAGAGTTTGTCCCGCTGGTCAACCACTTTGACAGGATCATCAACCAAACAGAGGAGTGAACAGCTCCCTGCCCTGATGTTAACTCACATACTGCCCGTCTAAACGGTGTTCAACTTCACGCATATTTGctgatggaaataaaaaaaaatcgtcttaatttcatttaaaaaaaaaagagagagaatatttTCAACATCTGTATCTGTGACACCAGCATAAAACCAAGGAACCTGGGAGGTTTGTATGGACAGAGAAAGATTCTGAACATGGAGGCGAGAGGCGTGGAGGTGGATGAACGCTACTTTGGAGGGTCTGTGTTGATGCCGTATTTCTCTTTTAGAAGCTTCAGctgttcctctttcttttttgtgtccATCTTCTGGAAAGCTCTGTTTGCGTTGTAGTAGAGGACCACCAGGTAACGGTTGCAGACGTTGAAGCCTGACAGATGGTCGCAGGCGTTCTTGGCGTCAAAGATGTCTTCATAAACCACGTAAGCCGTTCCTCTCGATTCAGGTGTGTTGCCTGTTCTGATTTGACGTATTGGTCCATATTTCCCAAAGATATCATACATTTCCTCCGCTGTGATCTTGTAAGGAAGGTTCCTGACGTACAGGATTCTGTTCACCTCGGGAGGCAATCGGATATTAGCGCGTTTCGCTGCTTGCATAGCCATGGTGAAAGTGTTGTAGATGTAAATAAGACCGCTGAACAACAAACACGCAGtttcccagctagctagctatctcgCCACTCTTCCCGTTAGGTTAAAATGGCAGCGGTAGACAGTTCACTTGGTAGTGACGGAATTCCGGTTTCCGACTTAGCGAATGGGTGCAAAAAACAGCGCAGTGCTGCCGCCCACAGGATGGCTGTACTTCAATTATCCACCAGGAATCAATCCTCACCGGTGCAGATGAGGATGTTATAAACAGCATAACTGCAGcgtttacaaagacaacaacttATTTTGACACAATTGTTT

Function

symbol description
sf3b6 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and spliceosomal complex. Orthologous to human SF3B6 (splicing factor 3b subunit 6).

NR:

description
PREDICTED: splicing factor 3B subunit 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248548 False 1108 lncRNA 0.42 2 10662117 10663493
TU248549 True 1197 TUCP 0.44 5 10622736 10666472

Neighbor

gene id symbol gene type direction distance location
fbxo16 NA coding upstream 228509 10382747 ~ 10394227 (+)
hnrnpub hnrnpu coding upstream 401994 10210136 ~ 10220742 (+)
LOC120547052 NA coding upstream 626185 9994881 ~ 9996551 (+)
LOC120546401 NA coding upstream 688817 9931356 ~ 9933919 (+)
LOC120547170 LOC103373899 coding upstream 717811 9893057 ~ 9904925 (+)
tdrd6 NA coding downstream 3645 10670117 ~ 10692564 (+)
ints9 ints9 coding downstream 41823 10708295 ~ 10723562 (+)
prkrip1 prkrip1 coding downstream 62129 10728601 ~ 10729980 (+)
LOC120547354 NA coding downstream 64033 10730505 ~ 10730782 (+)
clmnb NA coding downstream 68176 10734648 ~ 10744544 (+)
LOC120547246 NA non-coding upstream 461713 10144098 ~ 10161023 (+)
G183421 NA non-coding upstream 505451 10116919 ~ 10117285 (+)
G183419 NA non-coding upstream 505961 10116505 ~ 10116775 (+)
G183411 NA non-coding upstream 511868 10110504 ~ 10110868 (+)
G183380 NA non-coding upstream 577631 10043978 ~ 10045105 (+)
LOC120547320 NA non-coding downstream 90028 10756500 ~ 10760798 (+)
G183597 NA non-coding downstream 153992 10820464 ~ 10898613 (+)
G183610 NA non-coding downstream 237219 10903691 ~ 10912107 (+)
G183615 NA non-coding downstream 255353 10921825 ~ 10922055 (+)
G183620 NA non-coding downstream 290476 10956948 ~ 10957289 (+)
cdc42bpab fzd3,LOC103374788 other upstream 222924 10236949 ~ 10399812 (+)
LOC120546402 NA other upstream 510101 10111070 ~ 10112635 (+)
il17a/f3 NA other upstream 1020388 9595376 ~ 9602348 (+)
pnocb LOC103362991 other upstream 1118462 9469609 ~ 9504274 (+)
LOC120547211 hmbox1 other upstream 1297873 9296060 ~ 9324863 (+)
ches1 foxn3 other downstream 1097671 11764143 ~ 11869192 (+)
bcl11bb LOC103368061 other downstream 2040746 12707218 ~ 12739384 (+)
LOC120546167 NA other downstream 2280527 12946999 ~ 13008411 (+)
G183994 phip other downstream 2479003 13145475 ~ 13247416 (+)
LOC120546706 wdcp other downstream 2801763 13468235 ~ 13474159 (+)

Expression


Co-expression Network