G187299 (LOC104926707,LOC100302438)


Basic Information

Item Value
gene id G187299
gene name LOC104926707,LOC100302438
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25405717 ~ 25440543 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU253774
GAATTTTAACAACTATTTATTGTCTTGAAGTATGTAACAAAATAATCGCTATGaataaaaacagcattttcGCTTTGTACAACTAAGAAAATGTTTACAGACAAGCAAAACTAATTGTACAGCTAATTACCAATAATGGTAACATTGATACACAATAACAAAGAAGGTAAAAACGTTAAAGAACAGAACATCCTCACGTCAGTGTGCAAACCGTTTATACAGATGGACGTGTGGCCTTTGGTAAGGCAAAACATCctgataaattatttaaatagcctttatctacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaatcaatcTCTCACAAACAGCTAGGACAAAACAATAATTTATCTGCTAAAAACAGCATTGGACATACATGATAAAgcaaaaattattcataaaaaagAAATCTCCCATTGTACTGTTCTCACTGGGGTAAATCACGGGAGTGGGAGCGTGTTGTGTTTTTTAGATATGAAATGTCATACTATTTACAGCTTATGCTACAGTGGCACTAAGATGTCCATCATTTTAAAGGAATATGAAAAAGTACTtaggttgtgtttttgtttgatcTAATTATACAACAGCAATGAGGTAATATTTGTACATCAAAGATTTCCTTTGTTTTTCATCTCTCTCTGAAGAAAAGGCACACACGTCACATACACTTCATGCTAAATAGCCCTATCTGAAAAATACCTAATTCACTTTGTACAGCGGGAGATGATAGACACGGACACCTGGCTGTACCTTATTTTGGATCAGTTTTAACTGTGATattggatgtattttatttttactttttcaaagcaTTCCTATTTCCTTTGCTGCCTACATTGTAGGCAAGAGTCAATAAATTACATGTATTTACATAATATCAAATTGAAATCCTCAGAAGCTGAGGGGGATAAATCTCTTCGATGACCAAGGTTTTGATGTAAGATGGGGAGTATTTTGGAGGGAACACTGGCTCTAGcaattttctgtaaaataatcCACATATCTTTTCTTACTGGTTTGATATGGGAAGGTTGTGACTTCCATCTGACCCTGAGAGTTGTTTAGTTAACCAGACAGCATCAACAATGCCCATGATAGTTGTAAGTTCAGAAGAAAGCTGACCTaaatttaattttgtatttctcTTTCTTAGGTAGATGGTTAAAAGCACTTTCTTGTTCCAGtctccacatacagtacatgcataacCATAAACATCCACAACATTATGTTCCCCTTATTTCTAACTCGCTCTACTCCCATCAGTTTTACTAAATCCTCAACAACCAACATCCCTAAAAATTTTTATTGCTGTCTTCATCCACTGAGTCCTCAAATGTATCATTCAGATTCTACATTCTGGAAGGTCTGGTAAAGCAAAGGGaatatttcattgttttttttctttgggatGTCCATCCAGAAGCTAAGGTAGACAGGCACATAGGCTGAAGAGGtgtgatagaaagagagagatgtaaaGGCTTGGAAGTGCATAGTTGTCTATGGGGAGCTGTTCCCGCACAGAGATGAATGAGGTCTTTCAGAGAGCGAGAAAAGCAGGCAGAGCTAGGATAGAAAGgtgcttgttttcttttttccccagcTCTCTCTGCTCTCATGAAAACTAAGGGTGGAGGAGAAGGGGCTCTCTGATCCTCAACTGGCAGTCAACCGGTTGGTGCTCTGCTCGAACCAGCTTCAAGTTACCCTGAGGCTGACCACATGCCCATTGCCTCGTCCAAGTGTGCATGCCGCAGAAGAAAGAGTTGCGGAGATAAATCGGTCCCTGGACTTTTCATCAGAATACATAAGTTCATactttatacaaaaaaaggtGCATTCCTCAGAGCTTCCTGCGCCGTGCATTTAGACATCTGTTGAAAGAAAGAGACATAATAAAAGGAGTTGGATATGGTCTCGATTTCAAGAACAGAACATTGAATGCTTTCTGGGAAGTTGATTTCACATAAATGCTTACCTCTGCATTCATACTTGAGGTCTGAAAAGTATACCATCTCTTGTGAGAAGACAAAAAGACCTAGCCTGCCGCCTGCATATGTTTTGTCATAGATGCTACCAGAATCTGCCATGATCTTCTTGCCCTCATACATCACGACTCTAATAAGTCCTGTTCTTGGTCTGTGGATCAGATGCCATCTGTAGGCGGTGAAGTCTTTCCATCCAACGTTCTTAGGGTCGTGCCAAAGAGTGCGGACCTGTCCTGGGGTATTTCCTGTGTGCCAGAGGGCGTTCCTGAGGTGCTCTCCTGGGCCAGTGGTGGAGTTAACCACTTTGATGGACAGGCCAGAGTAGCCCTGGGCTTTGGTGGGTTTATTAGACCAGTATGTCTGCGTAATCTGCTTCCACATCACCACATAGAACCTGGAACTGGACTGGTAGCCGAACACAAAGCCGGCGTAATCATCATCCCTCTCGGTGTTGATGAAGAAAGTCCCACTGAAGTCCACTGAATTGAATTCGTGGTAAC
>TU253776
tacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaatcaatcTCTCACAAACAGCTAGGACAAAACAATAATTTATCTGCTAAAAACAGCATTGGACATACATGATAAAgcaaaaattattcataaaaaagAAATCTCCCATTGTACTGTTCTCACTGGGGTAAATCACGGGAGTGGGAGCGTGTTGTGTTTTTTAGATATGAAATGTCATACTATTTACAGCTTATGCTACAGTGGCACTAAGATGTCCATCATTTTAAAGGAATATGAAAAAGTACTtaggttgtgtttttgtttgatcTAATTATACAACAGCAATGAGGTAATATTTGTACATCAAAGATTTCCTTTGTTTTTCATCTCTCTCTGAAGAAAAGGCACACACGTCACATACACTTCATGCTAAATAGCCCTATCTGAAAAATACCTAATTCACTTTGTACAGCGGGAGATGATAGACACGGACACCTGGCTGTACCTTATTTTGGATCAGTTTTAACTGTGATattggatgtattttatttttactttttcaaagcaTTCCTATTTCCTTTGCTGCCTACATTGTAGGCAAGAGTCAATAAATTACATGTATTTACATAATATCAAATTGAAATCCTCAGAAGCTGAGGGGGATAAATCTCTTCGATGACCAAGGTTTTGATGTAAGATGGGGAGTATTTTGGAGGGAACACTGGCTCTAGcaattttctgtaaaataatcCACATATCTTTTCTTACTGGTTTGATATGGGAAGGTTGTGACTTCCATCTGACCCTGAGAGTTGTTTAGTTAACCAGACAGCATCAACAATGCCCATGATAGTTGTAAGTTCAGAAGAAAGCTGACCTaaatttaattttgtatttctcTTTCTTAGGTAGATGGTTAAAAGCACTTTCTTGTTCCAGtctccacatacagtacatgcataacCATAAACATCCACAACATTATGTTCCCCTTATTTCTAACTCGCTCTACTCCCATCAGTTTTACTAAATCCTCAACAACCAACATCCCTAAAAATTTTTATTGCTGTCTTCATCCACTGAGTCCTCAAATGTATCATTCAGATTCTACATTCTGGAAGGTCTGGTAAAGCAAAGGGaatatttcattgttttttttctttgggatGTCCATCCAGAAGCTAAGGTAGACAGGCACATAGGCTGAAGAGGtgtgatagaaagagagagatagagagagagagagagagagagat

Function

NR:

description
PREDICTED: thrombospondin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253774 True 2568 lncRNA 0.40 4 25427095 25429908
TU253776 False 1305 lncRNA 0.37 4 25405717 25440543

Neighbor

gene id symbol gene type direction distance location
gpr176 gpr176 coding upstream 37380 25351229 ~ 25368337 (+)
LOC120547103 LOC104958218,LOC103359443,LOC102785120,LOC102304693 coding upstream 55573 25341593 ~ 25350144 (+)
slc10a1 NA coding upstream 111041 25281934 ~ 25294676 (+)
fntb LOC103359368,LOC108233508 coding upstream 144471 25237827 ~ 25261246 (+)
LOC120546974 LOC102776492,LOC103132202,LOC103457360,LOC107105132,LOC102297120,LOC103359253,LOC106962735,LOC108233450 coding upstream 775127 24530331 ~ 24630590 (+)
katnbl1 katnbl1 coding downstream 148685 25589228 ~ 25596709 (+)
emc7b emc7 coding downstream 157135 25597678 ~ 25604734 (+)
aven NA coding downstream 169454 25609997 ~ 25650563 (+)
fmn1 fmn1 coding downstream 340239 25780782 ~ 25809922 (+)
LOC120546553 NA coding downstream 390407 25830950 ~ 25836432 (+)
G187260 NA non-coding upstream 66451 25338845 ~ 25339266 (+)
G187241 max,susd6,LOC103359378,LOC102235228,LOC107988062 non-coding upstream 98318 25261835 ~ 25307399 (+)
G187238 NA non-coding upstream 168838 25236531 ~ 25236879 (+)
G187236 NA non-coding upstream 177878 25227580 ~ 25227839 (+)
G187235 NA non-coding upstream 186934 25217153 ~ 25218783 (+)
G187310 NA non-coding downstream 85904 25526447 ~ 25526872 (+)
G187378 NA non-coding downstream 462395 25902938 ~ 25905402 (+)
G187431 NA non-coding downstream 526463 25967006 ~ 25967300 (+)
LOC120547280 NA non-coding downstream 807235 26247778 ~ 26249685 (+)
G187508 NA non-coding downstream 831825 26272368 ~ 26272595 (+)
trnat-ugu_3 NA other upstream 185777 25219868 ~ 25219940 (+)
lama2 lama2,LOC104942190 other upstream 396260 24810079 ~ 25009457 (+)
G187094 bpnt1,LOC102799416 other upstream 897904 24506913 ~ 24507813 (+)
extl3 extl3 other upstream 1217853 24155487 ~ 24187864 (+)
LOC120547070 NA other upstream 1258955 24144997 ~ 24146762 (+)
abracl abracl,LOC103376263 other downstream 489033 25929576 ~ 25935271 (+)
LOC120546493 NA other downstream 514707 25955250 ~ 25968925 (+)
nudt14 nudt14,LOC107560374 other downstream 566311 26006854 ~ 26036232 (+)
atp5mj NA other downstream 816932 26257475 ~ 26260895 (+)
gareml garem2 other downstream 824646 26265189 ~ 26283008 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G466133 NA non-coding CI01000325 null 6601076 ~ 6716044 (+)