fntb (LOC103359368,LOC108233508)


Basic Information

Item Value
gene id fntb
gene name LOC103359368,LOC108233508
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25237827 ~ 25261246 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781642.1
CGTAGCTCGTTCTCTTGCGCGCAGTTTCCGCCCATTCCAACCTCAGCAGGAAGTGGGTAGAGTCCACTTAAACTAAGCGAACTATCAAAACAAAGCTATCAGCATCACTTCCAGCATCTCCGCACATAACGGGGCCTGTCATCATCGTCATGGACGGTGTACCGACGCCTTTGCGGTGCTTTAATGAGTGCCATTCCGCAGCAATGCTCGTGGATGACGGGGTGGAAACGGTGACTTCACGGGAGCAGAAAAAAGTGGAACGCAGCATTGAAGAAGTCATCAGTGTTTACAAGCAAATGCACAGCTTACCACAGCCAACGTTGTTGCGGGAACAACACTACCAATATCTCAAGAAGGGCTTACGTCACTTATCTGATGCTTATGAGTGTCTGGATGCTAGCAGGCCGTGGCTCTGCTTCTGGATTCTTCACAGTCTGGAGTTACTAGAAGAGCCCATTCCTGCTGCTGTTGCCTCAgatgtgtgtCACTTTCTGGCCCGCTGTCAGAGCCCAGCAGGCGGTTTTGCGGGGGGACCAGGACAACACGCCCACCTCGCCCCTACCTACGCTGCTGTCAACGCCCTCTGTATCATCGGCACAGAACAGGCCTATAATATTATTGACAGGGAGAAGCTGTTAGATTTCCTAATGTCAGTGAAGCAGCCGGATGGCTCGTTTGTGATGCACGTTGGAGGAGAGGTGGATGTCAGgAGTGCATATTGTGCAGCCTCTGTAGCGTCGCTCACAAACATCCTCACACCTAAACTGTTTGAGGACACGACCAACTGGATCCTCAGTTGTCAGAACTGGGAGGGTGGTCTGAGCGGAGTGCCGGGTTTGGAGGCCCACGGCGGCTACACTTTCTGTGGCACAGCTGCCCTCGTCATCCTGGGCAAAGAACATATGCTGGATCTTAAAGCGTTGCTGCGGTGGGTGGTCAGCAGACAGATGCGATTCGAAGGAGGCTTCCAGGGCCGCTGTAATAAACTGGTGGACGGCTGCTACTCTTTCTGGCAGGCTGGACTCTTGCCTCTACTCCACAGAGCTTTATTCAAACAAGGAGAGTCGGAGCTGAGTCGGCAGCGGTGGATGTTCGAACAGCAGGCCTTGCAGGAGTACATCCTCCTCTGCTGTCAGAACCCAACAGGGGGCCTTGTGGATAAGCCCGGCAAATCCAGAGATTTTTACCACACGTGTTACTGCCTGAGCGGCCTCTCCATAGCACAGCACTTTGGAAACATGGACCTCCATCATGAGATGATCCTCGGCAAGGAGGACAACCGATTGGCTCCAACTCATCCAGTTTACAACATTTGTCCAGAGAAGGTGGCTCAGGCCCTGCAGCACTTCCACCGGCTGCCTGTCCCTGATGGCAACAGACAGCCGGGAGCCTCTGCTGACGCCAGAGTGTCGGACCCCACCGCTAACTCAGGATCAGGCGACCATCAGTCCTAGTTAGTCATCAGTGGAGACGTCACCGTGTGTCAACCAGCCAACTCTGGGGAACGGACTCGAACCAGCAAACAGCAGTCTGGTCTGATGTAGACAAGCCCCAAAAAAACCGGTTGGACAGTCGACCGTCGGTAGAAATGAGGGCTGGCGTTTAGGAAGAATTTGCCTGAATAAAGGtaaacagttgtgtgtgtgggcaacTTAGCATTCAGCGGAATTTTTGCTTGCAATGCGTAATGGTTTTCATTCtctgaaataaaagtgaaactTGGTTAAGGTTTCTGTATGACTGAA

Function

NR:

description
PREDICTED: protein farnesyltransferase subunit beta-like

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0018343 protein farnesylation biological_process
GO:0005965 protein farnesyltransferase complex cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K05954 FNTB; protein farnesyltransferase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781642.1 True 1745 mRNA 0.53 12 25237827 25261246

Neighbor

gene id symbol gene type direction distance location
LOC120546974 LOC102776492,LOC103132202,LOC103457360,LOC107105132,LOC102297120,LOC103359253,LOC106962735,LOC108233450 coding upstream 607237 24530331 ~ 24630590 (+)
grcc10 clg15h12orf57,c7h12orf57,LOC102299093,LOC107105086,LOC105938778,LOC101473413,LOC102199733 coding upstream 719644 24515444 ~ 24518183 (+)
LOC120546832 ppp1cb,LOC100692170,LOC103030509 coding upstream 731438 24498746 ~ 24506389 (+)
LOC120546425 NA coding upstream 752228 24446908 ~ 24485599 (+)
rars2 rars2 coding upstream 801504 24419260 ~ 24436323 (+)
slc10a1 NA coding downstream 20688 25281934 ~ 25294676 (+)
LOC120547103 LOC104958218,LOC103359443,LOC102785120,LOC102304693 coding downstream 80347 25341593 ~ 25350144 (+)
gpr176 gpr176 coding downstream 89983 25351229 ~ 25368337 (+)
katnbl1 katnbl1 coding downstream 327982 25589228 ~ 25596709 (+)
emc7b emc7 coding downstream 336432 25597678 ~ 25604734 (+)
G187238 NA non-coding upstream 948 25236531 ~ 25236879 (+)
G187236 NA non-coding upstream 9988 25227580 ~ 25227839 (+)
G187235 NA non-coding upstream 19044 25217153 ~ 25218783 (+)
G187212 NA non-coding upstream 94335 25111046 ~ 25143492 (+)
LOC120546772 NA non-coding upstream 225477 25009513 ~ 25012350 (+)
G187241 max,susd6,LOC103359378,LOC102235228,LOC107988062 non-coding downstream 589 25261835 ~ 25307399 (+)
G187260 NA non-coding downstream 77599 25338845 ~ 25339266 (+)
G187299 LOC104926707,LOC100302438 non-coding downstream 144471 25405717 ~ 25440543 (+)
G187301 thbs1,LOC104926707 non-coding downstream 172755 25434001 ~ 25434306 (+)
G187310 NA non-coding downstream 265201 25526447 ~ 25526872 (+)
trnat-ugu_3 NA other upstream 17887 25219868 ~ 25219940 (+)
lama2 lama2,LOC104942190 other upstream 228370 24810079 ~ 25009457 (+)
G187094 bpnt1,LOC102799416 other upstream 730014 24506913 ~ 24507813 (+)
extl3 extl3 other upstream 1049963 24155487 ~ 24187864 (+)
LOC120547070 NA other upstream 1091065 24144997 ~ 24146762 (+)
abracl abracl,LOC103376263 other downstream 668330 25929576 ~ 25935271 (+)
LOC120546493 NA other downstream 694004 25955250 ~ 25968925 (+)
nudt14 nudt14,LOC107560374 other downstream 745608 26006854 ~ 26036232 (+)
atp5mj NA other downstream 996229 26257475 ~ 26260895 (+)
gareml garem2 other downstream 1003943 26265189 ~ 26283008 (+)

Expression


Co-expression Network