LOC120546772


Basic Information

Item Value
gene id LOC120546772
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25009513 ~ 25012350 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU253634
GGAGGATATCCAGaTGGAGTTCGACAGGCCGCTCTCTCTACCAGCACTTCCTTCAAAGGTTGTTTGAGGAACCTGAAGATCACCAAGGCTTCCAAGACCATGGATGTGCAGTTCAACAAGGCTCTAGAGATTAAAGGAGTCCAGCCTCTCTCCTGTCCTGCTGTAGCTGCGTAACCGTTAGCATAGATCTTCACCTTTGCGGTTTCCCTATTACAGTACTTCGTCCAGAACCTGCACTGGGCACAATGTTTATATATCAGTGTGTTGGCCAGGTGCTGAGTCCAAAAAGTAGGTAATATGTTTCACAAGAACTCTCTTGTTGGAGCCCAGGTTTGATTTTTATCAGGTACAAATGCATCAAGTTTCTCTGCTAAACAGCTTCATCCTGCCAAGCGTCACAATGTTTAAAATTCAAGAGAAAACTACAGAAAGCTCCTAAAAACAGGAAATTATCAGCTCAAAATTCAGCCATATTACTTCCTGCAGTTTATCAGTACTGTTATAGTTATGCATTGAATATGAAATATCCATAAAATATTACTTAGTCAGTGGTCTCTTAAGGAAAAAGGTTGGAAACCGCTACTATGGGGTACTATATCTGATTGAGTTGGGCTTAAATATGACACACACCTGTGTTACCTTGATGCCTCTGTACCTGATAAAGAGCCagattccttgtatgtgtttacACTTACTTGGCCGTTAAAGCTGTATCTACATTGTGCTCTTACTAAATTAAGAAAAAGGGAAGCATTCTATGTCCTTGTGAAATACAATTATCGATTCTTTCTGTcaaaatcacaaaataaaaacaaactcatCCAGTTTGTAGGGTCACTGACAATGTCTCAGTGTATCATATATTGCCTTTTGTAAAATACAAATATCTAAACGGcatgaaaacacctgtgttttGCTCCTGTTTGGGGCTAACAACGTACAAAGTTACAATTTTCAGTCTGAGAACATGACTTAATTTACAGTGTAAGGCTCTGGTCAATAAATCTTATCATGGCTACAAATTGAGGTctcagtgttttaaaatgtgttttatagtTTTTACATGAAGGAAGGAAGATATTAGTATAAAGACCTGTGCTATGGTTACAGGTGTTCACGGTATTCAAGCTAATATTTTTGGGATATGTGTGATTATTTAGACATTAAATCAGATTTGTTTCCCAGAGAAGTCCCTCTTGAAAAGGTAGAACAGGGTATGTTGAGTCCTTTAGTTTAATATTTACTGTCTCACCCTCAAGACAACAGATGAAGTTGGATTTCTTTTCAGCCCTCTGTACAGCAACAGATGTGACCAGTGCTCTTCAGAGATCTTAAAATTACAACGAAAACAGCTGATC
>XR_005636936.1
ACCACGCCATCTCTTCGGGAGGATATCCAGaTGGAGTTCGACAGGCCGCTCTCTCTACCAGCACTTCCTTCAAAGGTTGTTTGAGGAACCTGAAGATCACCAAGGCTTCCAAGACCATGGATGTGCAGTTCAACAAGGCTCTAGAGATTAAAGGAGTCCAGCCTCTCTCCTGTCCTGCTGTAGCTGCGTAACCGTTAGCATAGATCTTCACCTTTGCGGTTTCCCTATTACAGTACTTCGTCCAGAACCTGCACTGGGCACAATGTTTATATATCAGTGTGTTGGCCAGGTGCTGAGTCCAAAAAGTAGGTAATATGTTTCACAAGAACTCTCTTGTTGGAGCCCAGGTTTGATTTTTATCAGGTACAAATGCATCAAGTTTCTCTGCTAAACAGCTTCATCCTGCCAAGCGTCACAATGTTTAAAATTCAAGAGAAAACTACAGAAAGCTCCTAAAAACAGGAAATTATCAGCTCAAAATTCAGCCATATTACTTCCTGCAGTTTATCAGTACTGTTATAGTTATGCATTGAATATGAAATATCCATAAAATATTACTTAGTCAGTGGTCTCTTAAGGAAAAAGGTTGGAAACCGCTACTATGGGGTACTATATCTGATTGAGTTGGGCTTAAATATGACACACACCTGTGTTACCTTGATGCCTCTGTACCTGATAAAGAGCCagattccttgtatgtgtttacACTTACTTGGCCGTTAAAGCTGTATCTACATTGTGCTCTTACTAAATTAAGAAAAAGGGAAGCATTCTATGTCCTTGTGAAATACAATTATCGATTCTTTCTGTcaaaatcacaaaataaaaacaaactcatCCAGTTTGTAGGGTCACTGACAATGTCTCAGTGTATCATATATTGCCTTTTGTAAAATACAAATATCTAAACGGcatgaaaacacctgtgttttGCTCCTGTTTGGGGCTAACAACGTACAAAGTTACAATTTTCAGTCTGAGAACATGACTTAATTTACAGTGTAAGGCTCTGGTCAATAAATCTTATCATGGCTACAAATTGAGGTctcagtgttttaaaatgtgttttatagtTTTTACATGAAGGAAGGAAGATATTAGTATAAAGACCTGTGCTATGGTTACAGGTGTTCACGGTATTCAAGCTAATATTTTTGGGATATGTGTGATTATTTAGACATTAAATCAGATTTGTTTCCCAGAGAAGTCCCTCTTGAAAAGGTAGAACAGGGTATGTTGAGTCCTTTAGTTTAATATTTACTGTCTCACCCTCAAGACAACAGATGAAGTTGGATTTCTTTTCAGCCCTCTGTACAGCAACAGATGTGACCAGTGCTCTTCAGAGATCTTAAAATTACAACGAAAACAGCTGATCCAATGGTTCTAAAGCCAGAtgcctgtatttgtgtgttatgTTTTGCATGGTGTGGCTGAAAAATACTTCAGCAGCTCTTTCTGAAATATATTCCTAATAGCATCAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253634 False 1358 lncRNA 0.38 2 25009530 25012241
XR_005636936.1 True 1484 lncRNA 0.38 2 25009513 25012350

Neighbor

gene id symbol gene type direction distance location
LOC120546974 LOC102776492,LOC103132202,LOC103457360,LOC107105132,LOC102297120,LOC103359253,LOC106962735,LOC108233450 coding upstream 378923 24530331 ~ 24630590 (+)
grcc10 clg15h12orf57,c7h12orf57,LOC102299093,LOC107105086,LOC105938778,LOC101473413,LOC102199733 coding upstream 491330 24515444 ~ 24518183 (+)
LOC120546832 ppp1cb,LOC100692170,LOC103030509 coding upstream 503124 24498746 ~ 24506389 (+)
LOC120546425 NA coding upstream 523914 24446908 ~ 24485599 (+)
rars2 rars2 coding upstream 573190 24419260 ~ 24436323 (+)
fntb LOC103359368,LOC108233508 coding downstream 225477 25237827 ~ 25261246 (+)
slc10a1 NA coding downstream 269584 25281934 ~ 25294676 (+)
LOC120547103 LOC104958218,LOC103359443,LOC102785120,LOC102304693 coding downstream 329243 25341593 ~ 25350144 (+)
gpr176 gpr176 coding downstream 338879 25351229 ~ 25368337 (+)
katnbl1 katnbl1 coding downstream 576878 25589228 ~ 25596709 (+)
G187165 ptprk,LOC102777941 non-coding upstream 352870 24655970 ~ 24656643 (+)
G187158 NA non-coding upstream 370029 24636725 ~ 24639484 (+)
G187074 NA non-coding upstream 622345 24386956 ~ 24387168 (+)
G187027 NA non-coding upstream 774762 24211413 ~ 24234751 (+)
G186972 NA non-coding upstream 862295 24072763 ~ 24147218 (+)
G187212 NA non-coding downstream 98696 25111046 ~ 25143492 (+)
G187235 NA non-coding downstream 204803 25217153 ~ 25218783 (+)
G187236 NA non-coding downstream 215230 25227580 ~ 25227839 (+)
G187238 NA non-coding downstream 224181 25236531 ~ 25236879 (+)
G187241 max,susd6,LOC103359378,LOC102235228,LOC107988062 non-coding downstream 249485 25261835 ~ 25307399 (+)
lama2 lama2,LOC104942190 other upstream 56 24810079 ~ 25009457 (+)
G187094 bpnt1,LOC102799416 other upstream 501700 24506913 ~ 24507813 (+)
extl3 extl3 other upstream 821649 24155487 ~ 24187864 (+)
LOC120547070 NA other upstream 862751 24144997 ~ 24146762 (+)
G186975 NA other upstream 926409 24079603 ~ 24083104 (+)
trnat-ugu_3 NA other downstream 207518 25219868 ~ 25219940 (+)
abracl abracl,LOC103376263 other downstream 917226 25929576 ~ 25935271 (+)
LOC120546493 NA other downstream 942900 25955250 ~ 25968925 (+)
nudt14 nudt14,LOC107560374 other downstream 994504 26006854 ~ 26036232 (+)
atp5mj NA other downstream 1245125 26257475 ~ 26260895 (+)

Expression


Co-expression Network