trnat-ugu_6


Basic Information

Item Value
gene id trnat-ugu_6
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2045746 ~ 2045819 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1097
GGTGCTGTGGCTTAGTTGGTTAAAGCCCCTGTCTTGTAAACAGGAgatcctgggttcaaatcccagcagTACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1097 True 74 tRNA 0.50 1 2045746 2045819

Neighbor

gene id symbol gene type direction distance location
LOC120547583 opn4,LOC107372404 coding upstream 54932 1972182 ~ 1990814 (+)
trnat-agu_10 NA coding upstream 81647 1964026 ~ 1964099 (+)
trnat-cgu_3 NA coding upstream 84781 1960892 ~ 1960965 (+)
LOC120548430 NA coding upstream 120200 1885951 ~ 1925546 (+)
LOC120548429 NA coding upstream 163698 1878418 ~ 1882048 (+)
trnat-agu_12 NA coding downstream 7108 2052927 ~ 2053001 (+)
trnat-agu_14 NA coding downstream 72928 2118747 ~ 2118820 (+)
trnat-agu_15 NA coding downstream 75573 2121392 ~ 2121465 (+)
LOC120548117 LOC103362069,LOC108229017,LOC106525817,LOC101169632,LOC101471088,LOC100695262 coding downstream 147481 2193300 ~ 2200457 (+)
rps27a rps27a coding downstream 458948 2504767 ~ 2508381 (+)
G191233 NA non-coding upstream 11690 2021693 ~ 2034056 (+)
G191214 NA non-coding upstream 45702 1999191 ~ 2000044 (+)
G191229 NA non-coding upstream 59996 1985439 ~ 1985750 (+)
G191227 NA non-coding upstream 62151 1972658 ~ 1983595 (+)
G191220 NA non-coding upstream 70546 1956619 ~ 1975200 (+)
G191218 NA non-coding downstream 44296 2090115 ~ 2153393 (+)
G191213 NA non-coding downstream 55889 2101708 ~ 2117071 (+)
G191240 NA non-coding downstream 79383 2125202 ~ 2152936 (+)
G191241 NA non-coding downstream 93063 2138882 ~ 2192858 (+)
G191245 NA non-coding downstream 98854 2144673 ~ 2233390 (+)
G191230 NA other upstream 41518 2002812 ~ 2004228 (+)
G191212 NA other upstream 96512 1948390 ~ 1949234 (+)
G190785 NA other upstream 265764 1701556 ~ 1779982 (+)
G190758 NA other upstream 430200 1581834 ~ 1615546 (+)
G190757 NA other upstream 502454 1542856 ~ 1543292 (+)
G191236 NA other downstream 2138 2047957 ~ 2104697 (+)
LOC120548303 usp54,LOC106455943,LOC108247408,LOC104941643,LOC107104721 other downstream 223009 2268828 ~ 2316402 (+)
G191565 sptbn1 other downstream 710335 2756154 ~ 2761679 (+)
G191567 sptbn1 other downstream 716231 2762050 ~ 2766062 (+)
G191571 NA other downstream 724814 2770633 ~ 3018448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) trnat-ugu_79 NA coding NW_025048114.1 JAEQBD010000459.1 1422313 ~ 1422386 (+)