G201173


Basic Information

Item Value
gene id G201173
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 9336645 ~ 9343993 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU272566
AGCTGTTGCGAGAGATTTAAGTCTTTTAAAACTCACTTTCCAACCTATGAAATGTTTTTGGGTAACATCTCGCCACACACTTACATTGAAGACTCTCCCAGACTTCTATGTGTCAGTGAGTTTTGAGAAAGTAGTGTTACGAGAAGTCTTTTGAGTGGTTAGCTGATAGGACAAGGGCTGGCACGTGACGTGAGGGGGgcgtgtgcgtgcgtatgtgtgtgtgacgctgGTAACGATTGCAGGTGTGTGAATGAGATTCATTGAGATTCATTCATTGAGATTGATGGAGGAAGCAGAGGCGGAGAGTGGAAACGGACGCCACAgagcgcgcgcgcacacacacacgcgcgcgcgctgAAGAAGCACACTGAGAGAAAGAGCGTCACTGACGGAAAGGTTTTCCCCACAACACGACTTTTTGTaaatgcaccttttttttttttttatagaagtTTCGGGCGCCCCACGGCTTCATCGTCCTAGGTGGGCATCTGACGCGGAGCTACTCGGAGGCCGCCCCTCCTGATGACCGACGCCGGCAGGCCCGGCTTCACAACGCGAGCGCACACAGTGTCCggAGAAAACTCGCAGGATGAACTCGCCCTCCTGGTGCGGCTCGTACGTGGAGGGGATGATGACGTACTCCCCGGGGCTCAGGCGGAAGCGCTGGGTCACCTCGCGCAGGTTGATGTAGGACTTACAGCGAGCTTTGGACGAGGTCAACAGGAAGAAGTCCTTCTGCATGTGCTGCTTGTTCCCGTGCATCTGGAAGCGGGGACACAACGGAAAAAAGGGTAGGAGATGTTGAATGGAAACTGTTCTAACGCTCCTAATTTAAAATGGACAGAAAGAATTCCCTCATAAGTTAGTCAAGTCCAGGACTATTGTATacacattgggggggggggtggatttTCTACATAGGATTTTGGCAATGTCCAGAGGTTTtgtgaggaaatgtgtttttgtcatGTAATCTTTGAATGATGACTCTTTTATTAAAAGGtccactgtgtaggaatttctcccatctagcggtgaaattgtattttgcattcaaatgaATTGTGCTCTCTAGCACCTCGCTTTTTTCAAATGCGTATGGCAACTACGGTAGCTGTGATGTGccaagaagctatgacaacatgtcttccaatTTTCCCTTTTTTGGCGACGAGGATTCCCTCTCCTGCAGCTCAGCATAAGtatgatcctccattatgaactaaagggCGGTGACAGGCGCCTCTTACTGATgtccttctccgtttcagctggtttcagtcacgtgacgctggctctgaacgaaaacgcgaatgtggattagctagacaggtcggctagtgctttatgtccctctcagcgattagagtttttcaaaatggcggaaggacatggaagcctccttggacttgcccTTCCattgtaaatacagataagaaattcttcgcttACGAGGAGAAGTCAGATGATTGGCtgaggtcattttacaccaacgaggacatatttatgaatgaagacattgattttagctaataaaatacttaaaacactacacagtgtacctttttaAGGTATTCTTTGGGACCA

Function

GO: NA

KEGG:

id description
ko03410 Base excision repair

RNA

RNA id representative length rna type GC content exon number start site end site
TU272566 True 1590 lncRNA 0.48 2 9336645 9343993

Neighbor

gene id symbol gene type direction distance location
znf106a NA coding upstream 11960 9307844 ~ 9324685 (+)
pacc1 tmem206 coding upstream 34376 9296321 ~ 9302269 (+)
hhipl2 hhipl2,LOC102795392 coding upstream 106405 9224142 ~ 9230240 (+)
LOC120549154 LOC104943010,LOC103369540,LOC102307836 coding upstream 130116 9192950 ~ 9206529 (+)
alms1 NA coding upstream 268767 9040266 ~ 9067878 (+)
LOC120549640 tmem87a coding downstream 27109 9371102 ~ 9391466 (+)
vps39 vps39 coding downstream 49781 9393774 ~ 9431047 (+)
galnt16 galnt16,LOC102792495 coding downstream 98555 9442548 ~ 9497538 (+)
numb numb coding downstream 157668 9501661 ~ 9552850 (+)
exd2 exd2 coding downstream 209613 9553606 ~ 9562568 (+)
G201175 NA non-coding upstream 5812 9329485 ~ 9330833 (+)
G201134 NA non-coding upstream 62668 9268917 ~ 9273977 (+)
G201056 NA non-coding upstream 116990 9218738 ~ 9219655 (+)
G201026 ube2d3,LOC100692968,LOC103369542,LOC106919162,LOC108251675 non-coding upstream 149327 9165123 ~ 9187318 (+)
G201043 NA non-coding upstream 173025 9162955 ~ 9163620 (+)
G201239 NA non-coding downstream 154503 9498496 ~ 9498783 (+)
G201242 NA non-coding downstream 218685 9562678 ~ 9612629 (+)
G201246 erh,LOC100699790,LOC101174968,LOC105904210,LOC101161113 non-coding downstream 242967 9586960 ~ 9590784 (+)
G201309 NA non-coding downstream 487644 9831637 ~ 9856727 (+)
G201314 NA non-coding downstream 562504 9906497 ~ 9906866 (+)
G201057 dcaf10,LOC102795877 other upstream 115343 9220641 ~ 9221302 (+)
LOC120550068 NA other upstream 2436301 6900139 ~ 6900344 (+)
LOC120549783 NA other upstream 2567983 6758637 ~ 6768662 (+)
vps29 eif5,vps29,LOC107595689 other upstream 2589243 6732248 ~ 6747402 (+)
G200492 NA other upstream 2654054 6677658 ~ 6682591 (+)
psen1 psen1,LOC100697238 other downstream 247177 9591170 ~ 9604625 (+)
G201287 NA other downstream 364871 9708864 ~ 9817625 (+)
smoc1 smoc1 other downstream 591743 9935736 ~ 10007687 (+)
LOC120549492 NA other downstream 698032 10042025 ~ 10044094 (+)
LOC120549595 NA other downstream 705518 10049511 ~ 10050146 (+)

Expression


Co-expression Network