LOC120560926 (LOC101488005,LOC107394164,LOC104930136,LOC103470078,LOC103366372)


Basic Information

Item Value
gene id LOC120560926
gene name LOC101488005,LOC107394164,LOC104930136,LOC103470078,LOC103366372
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25697018 ~ 25705444 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803817.1
AGATGCCGCTCATCACGCATCCTGTCCTGCCATTTTTGTGCTACTGGTGGCTAGCTTGCTAAGCAAGGGGTCTCCATCAGCAGGAGGCGGAGAAGACTGCAGGCAAACAGAGAGAGGCAGTCAAATCAAGAGACTGAACCTTCCCTGGAGAACCGGGGAGCCCTTACACACAGGAAACCGTTATTAGAAAGGCTGTACGATGTCCGATTTTGACAGCAACCCGTTCGCAGACCCGGACTTCAGCAATCCCTTtcagGATCCTTCGGTGACGCAGGTGACCCGGTCTGCCCCTCCTGGCGGTCTGGAAGAGTACAACCCCTTCACAGACGCCAGAACGGCGGCCCCTGGGAATGCCCCCAAAGCTACTCCTGCCCCCTCCCAGAACACACAACCTGCCATCATGAAGCCCACAGAAGAGCCACCAGCTTACACACAGCAACAGACTCAGCGGCATAATGAGgACCAAGCGCGTGCTCAGGCTGAGTTATTAAGAAGGCAGGAGGAGTTGGAGAAGAAAGCTGCAGAGCTTGATCGCCGGGAGAGAGAGTTACAGTCCCACGGAGCGGCGGGAGGGCGTAAGAACAACTGGCCTCCCCTGCCGGAGAAGCTCCCCGTTGGCCCATGTTTCTACCATGATATTACAGTGGACATTCCTGTAGAGTTCCAAAAGACCGTCAAGATCATGTACAACCTTTGGATGTTTCATGCAGGCACGCTCTTTGTGAACATGTTCGGCTGCCTGGCCTGGTTCTGTGTGGATGCATCTCGCGGTGTAGATTTTGGCCTGGCCATGCTATGGTTTCTGCTGTTTACCCCTTGTTCTTTTGTCTGCTGGTACAGACCGCTTTACGGGGCTTTCAGGAGTGACAGTTCATTCCGCttctttgtcttcttcttcGTCTATATCTGTCAGTTTGGAGTTCACGTTCTACAAACTATTGGCATCACTGGCTGGGGAACATGTGGTTGGATCGCAGCTTTAACTGGTCTGAACACCAGTATCCCAGTGGGCATCATCATGTTACTGATTGCAGCTCTGTTCACTGCACTCTCTGTGGGCTCGCTCATTATGTTTAAAAAGGTGCACGCACTGTATCGTACCACTGGTGCTAGTTTTGAGAAGGCTCAGCAGGAGTTTGCAACTGGGGTCATGTCTAACAAGACCGTTCAGACTGCGGCTGCCAACGCTGCAGCTAATGCTGCATCCAATGCTGCTCGTGGGGCCTTCAAACCTCAGCCATAAACTGACACACCcgcatacatgcacacatgctcacacatacaagcatatacaaaaaaaacacccaaaagttAGAGATGCACAACTCTGGCCTTGCAGGCTCTCAGATCAAATTGATTCTATTTATGATTGTTGTTATGCTAAGATTGCCCTGCACTTTGCTTAAAAAGCACAAAGAGCCAGAAATAACAGAGAAGTTAGTCAGATAAAGTAACCAGAGTTGTTCACCTTAACTTTAAATCAAATTTCCGTAAAAGCTATCTGACATCCTTCCTGTCTGCTTTTTAGTCAGATGACTGCTCAGATCCCTTGAAACATCCACTCATCCACTAAGTGACTCAAGGTttgctctgagtgtgtgtgggatttCATTTtgcactctctcactctcactctttcGCTTTCCTTGTTCTTCTGTCACCTTGAGGAGATGTTAGATCAGGCAGAGGTTAGGTTAGGTTCtagcatactttttttttttttttgccatggtGATGACCTCCAAACAGCTTCCTGCCTGGTTAATACAGTTTAGAGTTATGAAAAGTGATAATCTGATCATGGTGTTTTGCGCatagttctgtttttttgttcacATACCGAAAGTACAGCGTATGTTGGCTGGGCCTATGTGTGAATATGTACTTCAGAATTGTGGCTCTGacttatttgactttttttttttttaatccagcgCTTCGTCATTGAACTCTGAAAGGTCAGTTGTACCTTGTCTTAAATATGTGCTTCTATTCTGAGACAAATACCATCTTGGTAATTCATATAAGTAGAATATGTTGGTATGTTCTTATTTAAGGACCTGCCTGCAGCCCTCAGCAGTGCTCTAATGACACCTGTCAGTTGAACAATTATGGCCACTTTGTGTGCTACTTTGATTGGCAATGTGGGCTGGGTCTGTGGCTTTGACAGCATGATAACCACATGCATGTTTAGCACACTCAAGGTAGCGGTCATTCTGTTACAGGTCACCAGTTCTCACCTCAAACCTAAAAGAGGTTCAGTCAGATGCTTTAATGGCCTGGTGCactaaaggggaaaaacatgagacattttcatattttcattatGTATGTATGACATTAACAGACTGCCATGTGGCTCCATCTCAGTTGTTTTTGTAGCCCTTTACACTTAGTTAAAAACTAACGCTGCTAGTAATCTGAGAGCCGCCGGGTCGTGGCCTCCTGctgtcatgttttctgttgaaaaGGACACGTAACATTCATTCATAGAGTGACCTGCCTTTTCTTACAGAAGATGACCTGTGGTAAAGCTATGTTTTTTTCTATAGATTAACCTGCATACATAAACAAGTAAAAACATTGATACTGTGTATATTTACACAACATAGACTAACagtgcgttttcatttttacagaCGAAGTCAGTCCATTTGTTTATCCTCTGTCAGTATTGGATTGCTGACATTAGACCTTTCATAGGCAAAATGAACGTTAAGATAACAGAGGATTGGACTCAATGCCCATTCAGTGATATCACTAAGaagcatttatttatatacaataataacagtgttatttAGAACTAAATTTTACAGACTACTGTCACTGAAGTGAAATATGGACGTGGGTTACGGTACATTTGTGTCTACATTAGCACCTCTTATAGTGGTGGCGAGTGTCTGAAGATGTGAATGATAGATGACTGATGGCTGGTATTGCTGTTATTACAAATGTATGGACTGAACATCATAGTGGATTAAATACTCCTGTGACTGTTACAAAGTTAAAGATCAATAATTGGTTGTGGAATAAGCCTACATCTCgacaatattgtttttatttcgaAATACTTGTTTTAAATTCATTGCACATTTCTTGTTTTACGTTGTATtgcaaaagacaaaaatgtttttatttatggtGTAAGTTATGGTttaagttgtttgcatttcagttttgtttggtttaatttcacattatatattatgtttgtgtgcttttgtAATGACATGATCATAGCATCAGCTAGATTTAAAAGTGTTCAATGACTTTGCAACTTGACCCTGCAagaggtgtgcatgtgtggatgGGGATGTGTGTAGGATTGGTATGAAAGGCAAATAAAATCTCCCTCAAGTGTTATTCTATGTCCTGAAAAGCTGTGAGAAATCTACCAAATGTCCAtatggatttgtttttaaatctttgtTTGTGATGTGCTCCCTTGACATGTTTTACTTTAAGATATTACACAAGTTTTCTTTGCTACAAACACCAACATGATTTCCATGATACTGTTAACAGTTGTTATTTGAAGCCATGCCACAGTGGGTCATTTCTTGATGTATTTGGGTGTGCTGGTCGGCAGTACAGAACGATGTATTTGAAGTTTTCTGACACAAAACTGTGTTTTTGACGTGTGAACATGTTATTTCACTGAATCAGAGAAGAAACTCATTAAAAAGGGACACCTGTATATTTTGTAAAGTTAATAAATTTGATCCCCCATTAACAATCacatgtaaaaagaaaacaatgcaCTCTTGTCTGGCCTTTGTTGCATGTGGAATAGTTTGagttttgtatatttatggtattaacatgaaataaaatttgAAAGAAA
>XM_039803818.1
AGATGCCGCTCATCACGCATCCTGTCCTGCCATTTTTGTGCTACTGGTGGCTAGCTTGCTAAGCAAGGGGTCTCCATCAGCAGGAGGCGGAGAAGACTGCAGGCAAACAGAGAGAGGCAGTCAAATCAAGAGACTGAACCTTCCCTGGAGAACCGGGGAGCCCTTACACACAGGAAACCGTTATTAGAAAGGCTGTACGATGTCCGATTTTGACAGCAACCCGTTCGCAGACCCGGACTTCAGCAATCCCTTtcagGATCCTTCGGTGACGCAGGTGACCCGGTCTGCCCCTCCTGGCGGTCTGGAAGAGTACAACCCCTTCACAGACGCCAGAACGGCGGCCCCTGGGAATGCCCCCAAAGCTACTCCTGCCCCCTCCCAGAACACACAACCTGCCATCATGAAGCCCACAGAAGAGCCACCAGCTTACACACAGCAACAGACTCAGgACCAAGCGCGTGCTCAGGCTGAGTTATTAAGAAGGCAGGAGGAGTTGGAGAAGAAAGCTGCAGAGCTTGATCGCCGGGAGAGAGAGTTACAGTCCCACGGAGCGGCGGGAGGGCGTAAGAACAACTGGCCTCCCCTGCCGGAGAAGCTCCCCGTTGGCCCATGTTTCTACCATGATATTACAGTGGACATTCCTGTAGAGTTCCAAAAGACCGTCAAGATCATGTACAACCTTTGGATGTTTCATGCAGGCACGCTCTTTGTGAACATGTTCGGCTGCCTGGCCTGGTTCTGTGTGGATGCATCTCGCGGTGTAGATTTTGGCCTGGCCATGCTATGGTTTCTGCTGTTTACCCCTTGTTCTTTTGTCTGCTGGTACAGACCGCTTTACGGGGCTTTCAGGAGTGACAGTTCATTCCGCttctttgtcttcttcttcGTCTATATCTGTCAGTTTGGAGTTCACGTTCTACAAACTATTGGCATCACTGGCTGGGGAACATGTGGTTGGATCGCAGCTTTAACTGGTCTGAACACCAGTATCCCAGTGGGCATCATCATGTTACTGATTGCAGCTCTGTTCACTGCACTCTCTGTGGGCTCGCTCATTATGTTTAAAAAGGTGCACGCACTGTATCGTACCACTGGTGCTAGTTTTGAGAAGGCTCAGCAGGAGTTTGCAACTGGGGTCATGTCTAACAAGACCGTTCAGACTGCGGCTGCCAACGCTGCAGCTAATGCTGCATCCAATGCTGCTCGTGGGGCCTTCAAACCTCAGCCATAAACTGACACACCcgcatacatgcacacatgctcacacatacaagcatatacaaaaaaaacacccaaaagttAGAGATGCACAACTCTGGCCTTGCAGGCTCTCAGATCAAATTGATTCTATTTATGATTGTTGTTATGCTAAGATTGCCCTGCACTTTGCTTAAAAAGCACAAAGAGCCAGAAATAACAGAGAAGTTAGTCAGATAAAGTAACCAGAGTTGTTCACCTTAACTTTAAATCAAATTTCCGTAAAAGCTATCTGACATCCTTCCTGTCTGCTTTTTAGTCAGATGACTGCTCAGATCCCTTGAAACATCCACTCATCCACTAAGTGACTCAAGGTttgctctgagtgtgtgtgggatttCATTTtgcactctctcactctcactctttcGCTTTCCTTGTTCTTCTGTCACCTTGAGGAGATGTTAGATCAGGCAGAGGTTAGGTTAGGTTCtagcatactttttttttttttttgccatggtGATGACCTCCAAACAGCTTCCTGCCTGGTTAATACAGTTTAGAGTTATGAAAAGTGATAATCTGATCATGGTGTTTTGCGCatagttctgtttttttgttcacATACCGAAAGTACAGCGTATGTTGGCTGGGCCTATGTGTGAATATGTACTTCAGAATTGTGGCTCTGacttatttgactttttttttttttaatccagcgCTTCGTCATTGAACTCTGAAAGGTCAGTTGTACCTTGTCTTAAATATGTGCTTCTATTCTGAGACAAATACCATCTTGGTAATTCATATAAGTAGAATATGTTGGTATGTTCTTATTTAAGGACCTGCCTGCAGCCCTCAGCAGTGCTCTAATGACACCTGTCAGTTGAACAATTATGGCCACTTTGTGTGCTACTTTGATTGGCAATGTGGGCTGGGTCTGTGGCTTTGACAGCATGATAACCACATGCATGTTTAGCACACTCAAGGTAGCGGTCATTCTGTTACAGGTCACCAGTTCTCACCTCAAACCTAAAAGAGGTTCAGTCAGATGCTTTAATGGCCTGGTGCactaaaggggaaaaacatgagacattttcatattttcattatGTATGTATGACATTAACAGACTGCCATGTGGCTCCATCTCAGTTGTTTTTGTAGCCCTTTACACTTAGTTAAAAACTAACGCTGCTAGTAATCTGAGAGCCGCCGGGTCGTGGCCTCCTGctgtcatgttttctgttgaaaaGGACACGTAACATTCATTCATAGAGTGACCTGCCTTTTCTTACAGAAGATGACCTGTGGTAAAGCTATGTTTTTTTCTATAGATTAACCTGCATACATAAACAAGTAAAAACATTGATACTGTGTATATTTACACAACATAGACTAACagtgcgttttcatttttacagaCGAAGTCAGTCCATTTGTTTATCCTCTGTCAGTATTGGATTGCTGACATTAGACCTTTCATAGGCAAAATGAACGTTAAGATAACAGAGGATTGGACTCAATGCCCATTCAGTGATATCACTAAGaagcatttatttatatacaataataacagtgttatttAGAACTAAATTTTACAGACTACTGTCACTGAAGTGAAATATGGACGTGGGTTACGGTACATTTGTGTCTACATTAGCACCTCTTATAGTGGTGGCGAGTGTCTGAAGATGTGAATGATAGATGACTGATGGCTGGTATTGCTGTTATTACAAATGTATGGACTGAACATCATAGTGGATTAAATACTCCTGTGACTGTTACAAAGTTAAAGATCAATAATTGGTTGTGGAATAAGCCTACATCTCgacaatattgtttttatttcgaAATACTTGTTTTAAATTCATTGCACATTTCTTGTTTTACGTTGTATtgcaaaagacaaaaatgtttttatttatggtGTAAGTTATGGTttaagttgtttgcatttcagttttgtttggtttaatttcacattatatattatgtttgtgtgcttttgtAATGACATGATCATAGCATCAGCTAGATTTAAAAGTGTTCAATGACTTTGCAACTTGACCCTGCAagaggtgtgcatgtgtggatgGGGATGTGTGTAGGATTGGTATGAAAGGCAAATAAAATCTCCCTCAAGTGTTATTCTATGTCCTGAAAAGCTGTGAGAAATCTACCAAATGTCCAtatggatttgtttttaaatctttgtTTGTGATGTGCTCCCTTGACATGTTTTACTTTAAGATATTACACAAGTTTTCTTTGCTACAAACACCAACATGATTTCCATGATACTGTTAACAGTTGTTATTTGAAGCCATGCCACAGTGGGTCATTTCTTGATGTATTTGGGTGTGCTGGTCGGCAGTACAGAACGATGTATTTGAAGTTTTCTGACACAAAACTGTGTTTTTGACGTGTGAACATGTTATTTCACTGAATCAGAGAAGAAACTCATTAAAAAGGGACACCTGTATATTTTGTAAAGTTAATAAATTTGATCCCCCATTAACAATCacatgtaaaaagaaaacaatgcaCTCTTGTCTGGCCTTTGTTGCATGTGGAATAGTTTGagttttgtatatttatggtattaacatgaaataaaatttgAAAGAAA

Function

NR:

description
secretory carrier-associated membrane protein 1 isoform X1

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803817.1 True 3847 mRNA 0.42 10 25697018 25705444
XM_039803818.1 False 3835 mRNA 0.42 9 25697018 25705444

Neighbor

gene id symbol gene type direction distance location
LOC120561270 LOC104948669,LOC108233717 coding downstream 24405 25669408 ~ 25672613 (-)
LOC120561271 LOC104930139,LOC104948670,LOC108233718,LOC107394162 coding downstream 27732 25664831 ~ 25669286 (-)
cep78 NA coding downstream 98792 25581469 ~ 25598226 (-)
LOC120560634 ap3s1 coding downstream 132425 25553418 ~ 25564593 (-)
dmxl1 dmxl1 coding downstream 376931 25259941 ~ 25320087 (-)
LOC120561188 ckmt2,LOC103374420,LOC104955821 coding upstream 89649 25795093 ~ 25801032 (-)
LOC120560029 rasgrf2 coding upstream 98389 25803833 ~ 25853800 (-)
msh3 LOC102796159,LOC104955852 coding upstream 149476 25854920 ~ 25913631 (-)
LOC120560360 LOC103357153,LOC104943292 coding upstream 225729 25931173 ~ 25939770 (-)
fahd2a LOC104967721,LOC104921636,LOC102798335 coding upstream 457124 26162568 ~ 26173885 (-)
G64541 cdo1 non-coding downstream 71519 25569974 ~ 25625499 (-)
LOC120560057 NA non-coding downstream 649971 25044895 ~ 25047047 (-)
G64250 NA non-coding downstream 1403062 24293653 ~ 24293956 (-)
G64249 NA non-coding downstream 1403419 24293015 ~ 24293599 (-)
G64234 gadd45g,LOC102775619 non-coding downstream 1481929 24213895 ~ 24215089 (-)
G64673 NA non-coding upstream 219125 25924569 ~ 25924785 (-)
G64693 NA non-coding upstream 246090 25951534 ~ 25952579 (-)
G64730 LOC104958878,LOC103357146,LOC107393839,LOC106513646,LOC107094516,LOC102798825 non-coding upstream 473705 26179149 ~ 26180205 (-)
G64735 NA non-coding upstream 486540 26191984 ~ 26245476 (-)
G64742 NA non-coding upstream 498851 26204295 ~ 26294620 (-)
mrps36 mrps36 other downstream 33613 25659551 ~ 25663405 (-)
commd10 commd10,LOC102791033 other downstream 149166 25488482 ~ 25547852 (-)
mapkapk5 mapkapk5 other downstream 591588 25089935 ~ 25105430 (-)
LOC120560369 LOC104950284,LOC103362719 other downstream 616249 25066760 ~ 25080769 (-)
rnf165b LOC102783683,LOC101475525,LOC103362723,LOC103470112,LOC101070551,LOC100705592,LOC107086292,LOC106944956,LOC103141773,LOC106924720 other downstream 680097 25001323 ~ 25016921 (-)
G64821 NA other upstream 734590 26440034 ~ 26447513 (-)
dynll1 LOC103397138,LOC103359517,LOC107554284,LOC100698873,LOC101063088 other upstream 763714 26469158 ~ 26514745 (-)
LOC120560729 pradc1,LOC102787255 other upstream 1100188 26805632 ~ 26811330 (-)
sb:cb288 NA other upstream 1182562 26888006 ~ 26891480 (-)
agpat9l LOC107089700,LOC106962842,LOC103145885 other upstream 1206849 26912293 ~ 26924669 (-)

Expression


Co-expression Network