cldn5a (cldn5,LOC103357131)


Basic Information

Item Value
gene id cldn5a
gene name cldn5,LOC103357131
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26412828 ~ 26414627 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804493.1
CCACCCCGCAGATATTCGTGGTACGGTGCTTCTGTGATTCCAGTTGTTTTCACAACCTCTTAACAAAGAGACTCAGCTGCTGTCTCTTACATCTCCGAGTAAATGTGGTGAGTGATGCGCAACTAACGATTGACGCTCCTGTACATCGAGGCGAGAACGAAGAGATAAAGAGTAGAAATACACCTTGCTCTCAAGAAGATACATTAAGGGGAGAGTTCGAAAAGTTTCAGACAGGCTTTGACTAAACGTATAGAGCGAAAATGGTGTCGGCCGGACTGGAGATCGTGGGACTATCGCTGTGCGTAATTGGCTCGTTCCTGGTGATGGTTTCGTGCGGGCTGCCCATGTGGAAGGTGACGGCTTTCATCGAAGCCAACATCGTGGTGGCTCAGACAATCTGGGACGGCTTGTGGATGACGTGTGTGGTGCAAAGCACGGGCCAGATGCAGTGCAAGGTGCACGATTCCGTCCTCTCCCTCAGCCACGACCTGCAGGCGGCCAGAGCGCTCACCATCATCTCCTCGGTGATGGGCGTGTTGGGGCTCATGGTTGTGATTGCGGGGGCGCAGTGCACCAACTGTATCCGCGCTGAGTACGTCAAAGCCCGGGTGGTGAACGCCGGAGGGGTCATCTACATCATCAgtggtgtgtttgtgctggTGCCTCTCTGCTGGATGGCCAACAGCATCATATCGGACTTTTACAACCCGCAGGTACCCGCATCAAAGAAGAGGGAGATCGGCGCTGCGCTCTACATCGGCTGGGCGGCCTCAGCGATGCTGCTGCTCGGAGGATCGCTGCTGTGCTGCTCCTGTCCCTCCAGCGGGAACTCTGGATACTCGGTAAAGTACGCACCGACTAAGAGAGCCACGCCGAACGGGGACTATGATAAGAGGAATTATGTGTAGCTATGTGCTCATAGCAGGCGGTGCGTAAAAGTGACCTGCAgcttttgaaaaactgttttttgaCGGATTTCTTTGCACctgcagtttttgtttttagaaataTGAACTCTGAAAATCAATGGAAGCACAAATGCTGTTTTTACACTGGCCCTTCAATACGCTCGGACCACAAATTCAAAAATCATTTTTGCATCTAcaggagattaaaaaaagactatctaCTATAAAAGGCAGCACACGACAAAGGGAGTATCTGTGTTAGGTACCTGCTTTTTGTAAGTCTTCGAAATTATTATAGGCTATTTTAAATTCTTTACCGTTGTAACTGCAAAGTGTTTCCTTTCTTGAGGAACTCTTGCCATCGAATATATAGCTCTGTTCTGTTCTTTTGCTTTGATGTTCATTGTGAGCACACACTTGTACAGTAACTGAGAATGATTGCACTCTCGCACATTCAAAGACCTATTTCCTTTAGTGGAACTACGCCAACATGTTGAGGACTCCAACAATGTCTAAAAGCAATAAAGACCGAAAAAGAAAAGTCTAGACATGTTAAAGTCCCAATAAATCTCGGGCAGGCTTTTTTGTTGTTCAGAAATTGATGGCGGTGACTTTAAAGTGTGCAGTGTGCAGTCTAATTTTGGACCTGTAGCTTTCGGAGAGCCTAGGATCTGTAGATCACAACCTGAAATGTTACAGTCCGTTATTCGTCTGCACTGAACACCTGCAACGTTTTTACATCGTCGgaagtcttttctttttagaAATTCTAGGAATaaattttgttttctgttggttTGTTGATGTTTGATGTAATGATTCATTATTCTTGTATATGAAGATGCCATATTGTGTCATTTTATTAAgattaaactgaatatattgtCTGAAA

Function

symbol description
cldn5 Predicted to enable identical protein binding activity. Involved in several processes, including establishment of blood-retinal barrier; positive regulation of bicellular tight junction assembly; and regulation of gene expression. Located in apicolateral plasma membrane and bicellular tight junction. Colocalizes with cortical actin cytoskeleton. Implicated in schizophrenia.

NR:

description
claudin-4-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804493.1 True 1800 mRNA 0.46 1 26412828 26414627

Neighbor

gene id symbol gene type direction distance location
letm2 letm2 coding downstream 55990 26343941 ~ 26356838 (-)
prnpb NA coding downstream 70717 26338836 ~ 26342111 (-)
LOC120560807 NA coding downstream 74327 26333015 ~ 26338501 (-)
fahd2a LOC104967721,LOC104921636,LOC102798335 coding downstream 238943 26162568 ~ 26173885 (-)
LOC120560360 LOC103357153,LOC104943292 coding downstream 473058 25931173 ~ 25939770 (-)
mrpl40 mrpl40 coding upstream 81795 26496422 ~ 26499331 (-)
polb polb,LOC102781262 coding upstream 116715 26531342 ~ 26537704 (-)
enkd1 enkd1,LOC102781555 coding upstream 123443 26538070 ~ 26541738 (-)
ikbkb ikbkb coding upstream 139105 26553732 ~ 26572090 (-)
snap29 snap29 coding upstream 267869 26682496 ~ 26687397 (-)
G64786 NA non-coding downstream 29445 26323834 ~ 26383383 (-)
G64788 NA non-coding downstream 84430 26324902 ~ 26328398 (-)
G64768 NA non-coding downstream 90892 26303824 ~ 26321936 (-)
G64742 NA non-coding downstream 118208 26204295 ~ 26294620 (-)
G64852 NA non-coding upstream 33736 26448363 ~ 26462070 (-)
G64859 rpl6,LOC102780500 non-coding upstream 91218 26505845 ~ 26511346 (-)
LOC120561456 NA non-coding upstream 165252 26579879 ~ 26580815 (-)
LOC120560048 NA non-coding upstream 183866 26598493 ~ 26613017 (-)
G64933 NA non-coding upstream 243581 26658208 ~ 26658476 (-)
mrps36 mrps36 other downstream 749423 25659551 ~ 25663405 (-)
commd10 commd10,LOC102791033 other downstream 864976 25488482 ~ 25547852 (-)
mapkapk5 mapkapk5 other downstream 1307398 25089935 ~ 25105430 (-)
LOC120560369 LOC104950284,LOC103362719 other downstream 1332059 25066760 ~ 25080769 (-)
rnf165b LOC102783683,LOC101475525,LOC103362723,LOC103470112,LOC101070551,LOC100705592,LOC107086292,LOC106944956,LOC103141773,LOC106924720 other downstream 1395907 25001323 ~ 25016921 (-)
G64821 NA other upstream 25407 26440034 ~ 26447513 (-)
dynll1 LOC103397138,LOC103359517,LOC107554284,LOC100698873,LOC101063088 other upstream 54531 26469158 ~ 26514745 (-)
LOC120560729 pradc1,LOC102787255 other upstream 391005 26805632 ~ 26811330 (-)
sb:cb288 NA other upstream 473379 26888006 ~ 26891480 (-)
agpat9l LOC107089700,LOC106962842,LOC103145885 other upstream 497666 26912293 ~ 26924669 (-)

Expression


Co-expression Network