LOC120560048


Basic Information

Item Value
gene id LOC120560048
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26598493 ~ 26613017 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639408.1
gctagcctggctaaggataCTACCACACAGACCTCCACTGCCaagcctcctactcaccaaccCCAGATCCatcgcacacaaaatggatgagcATAGCAACGAACAACtacacacagaactgctgcATGATGATTATCACCGAAACCTGGCTGAACCCCCTCTACCCGGATGCCGAGTCCGAGCTAGCTACCAAGGCAAGGTAAAAATCTCACCTGTCCTTCTGGGTGGAGCTGGAGGTCCACTgtgtctgacaggaagaggacaGCCTGTTGTAACTTCCCTCTGATGAGCCACCTGTAAAGTCTCAGTGAAATGTGTTATCACCGCCCAGGACGCCAACaggaggaaaaaggaaaaagtcaTGTAACCATGAAGTGAAAGCTGATGCAAACAAGGACAAGACACGATGACATTCATTCAAATGTGTCACTATTCAGACAATAGTAATAGTGTAGCTGTGTTATCACTAGCAATTATATTAGAAAAAATAACCAGCTACGATAGCTACTATAATTTAGAATTTTTATACTTGAGAAGAGAGAGAGCCATTAAGATGTGCTGAGTATTTCTTTCCATTTTTAGTTAAGCTGACCAAATATTGTATATTCTTAAACACAATATTCCATTGATCGATATTCAACACTTTCTGCTCTTCTCTTTTCCATACTAGTTTAAGTGCATTCACACATCACAGACTGGACCTCCATTTTTTTTCACGTTTGTTTTCAACATGTGAATACACAGGGAACTCCTCCAACCACAAAAcattttatctgcatgaatagtTGACAACAGATAACTCATATTAAAGCAGGAAGAAGGCTCACATGAGACCGTAGAGCTGTTTTACCCCTCCACgaatacttacttacttactgtagTGAGATATTACCTATACACAATAATATCCGTGTTACCAAATTGGCTAGAGAGTGAAAACTATATGAGCAAACATGTTATGATCAGACGTGTTCTCACTGTGAAAGAAAATAGGTCTGTTTTTCTGTGACTCTCTACAAGGAGATCAACACATTTGGGAACATTTGCACCTGACAAAATAATCAAACTATTCAAAAAGATCACCACCAAAATTAAACGTTGAAATAAACAAACTCCTCTCAGTCTCAGACAGTCTTTTTTGTTATcagataaatacatttttccctGCCTGAAACTTTGCAGACTGAACTCCAACACCATCTCTCAGTGAACAACAGCACCATCCAAACTACTGCATGGTCATGTTCACTGAAAAAAGAGTCTGATATACATTATGGGAAAGTGATAGAAATATCACTGGCAAGAAAAGTATCTATATTTCAAATAGTTCAAATCTAACAACTACAAACTAAATATGAAGCTTGAGATGTTTTATGTAACTATGTACAAGTGACACTATTCGGTCTACCTGAAACAAAtaatgcatgtacagtatgtgcaacaTATGTGCTTGCTAGCTTTccaatatattttaatttgataCATTTCAGATTAAAAAATCTCTTGTATCAACTGATTCAATAATGTTTTGAAATCCTAGTAAATTAAACTAAAActtaaaacactgaaaaatgttTGATTGAAATCTAATGACTTCAACTTAGTCAACTAAGAAACACATTTTATGGAGGACCACTCAGCAAAGAACAAACATAAAAGAAAGTTTAACAAACTTGTTGACCTTAATTCTATAGTAAAGCACAACGCTGATACCAGCAGGTGTTTTTACTTTCAGATTATATTCAAACACCATGAATCGTCTGGGTTATTTTTACTGTTTGCCTTCACACTCCACACAATCACAACTTTTAACAGTGTAGCTGCCATCACATCTTTCCCCCATTCAGAACTCCCTAAGAAAACATGCTGAAATAAAAGTTAACTACATGGGAGGTTTACAGTTGACTCAACTCTAACATTAACAACACCTGTTCACTTCCTTCTCACTCCACCCAAAATTATCAGAATGTAAaccaaaatattacaaaaataaaacatttctttacCATTGTCATGATTTGGGGTCGACTCTCGCAGCTCAAGTCATGGGGAAATGTCTTTGTTTCGGTCTTTGGATGCAAATGGTTTTGAAGATTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639408.1 True 2099 lncRNA 0.37 3 26598493 26613017

Neighbor

gene id symbol gene type direction distance location
ikbkb ikbkb coding downstream 26403 26553732 ~ 26572090 (-)
enkd1 enkd1,LOC102781555 coding downstream 56755 26538070 ~ 26541738 (-)
polb polb,LOC102781262 coding downstream 60789 26531342 ~ 26537704 (-)
mrpl40 mrpl40 coding downstream 99162 26496422 ~ 26499331 (-)
cldn5a cldn5,LOC103357131 coding downstream 183866 26412828 ~ 26414627 (-)
snap29 snap29 coding upstream 69479 26682496 ~ 26687397 (-)
serpind1 serpind1 coding upstream 81520 26694537 ~ 26697738 (-)
hic2 hic2 coding upstream 153470 26766487 ~ 26781265 (-)
si:dkey-88e18.2 NA coding upstream 198725 26811742 ~ 26816634 (-)
LOC120560730 btf3,LOC103470010,LOC107089645,LOC106958054,LOC106926613,LOC104922967 coding upstream 206422 26819439 ~ 26829240 (-)
LOC120561456 NA non-coding downstream 17678 26579879 ~ 26580815 (-)
G64859 rpl6,LOC102780500 non-coding downstream 87147 26505845 ~ 26511346 (-)
G64852 NA non-coding downstream 136423 26448363 ~ 26462070 (-)
G64786 NA non-coding downstream 215110 26323834 ~ 26383383 (-)
G64788 NA non-coding downstream 270095 26324902 ~ 26328398 (-)
G64933 NA non-coding upstream 45191 26658208 ~ 26658476 (-)
G64934 NA non-coding upstream 46281 26659298 ~ 26659547 (-)
G64935 NA non-coding upstream 49211 26662228 ~ 26663777 (-)
G65015 NA non-coding upstream 239775 26852792 ~ 26858716 (-)
G65025 LOC103359538 non-coding upstream 259959 26872976 ~ 26874374 (-)
dynll1 LOC103397138,LOC103359517,LOC107554284,LOC100698873,LOC101063088 other downstream 83748 26469158 ~ 26514745 (-)
G64821 NA other downstream 150980 26440034 ~ 26447513 (-)
mrps36 mrps36 other downstream 935088 25659551 ~ 25663405 (-)
commd10 commd10,LOC102791033 other downstream 1050641 25488482 ~ 25547852 (-)
mapkapk5 mapkapk5 other downstream 1493063 25089935 ~ 25105430 (-)
LOC120560729 pradc1,LOC102787255 other upstream 192615 26805632 ~ 26811330 (-)
sb:cb288 NA other upstream 274989 26888006 ~ 26891480 (-)
agpat9l LOC107089700,LOC106962842,LOC103145885 other upstream 299276 26912293 ~ 26924669 (-)
arl15a ndufs4,arl15 other upstream 399245 27012262 ~ 27174473 (-)
cspg4ba LOC103367209,LOC102080857,LOC104955791 other upstream 597199 27210216 ~ 27245589 (-)

Expression


Co-expression Network