LOC113524770 (calm1,LOC102778633,LOC102293206,LOC107396020,LOC105896953)


Basic Information

Item Value
gene id LOC113524770
gene name calm1,LOC102778633,LOC102293206,LOC107396020,LOC105896953
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20392640 ~ 20403559 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911126.2
TTGCGTGGCGGAGGGATACATTTCACCCACAGCAGCGAGAACAAACAACATCACTGCGCCCCTTAAACCGCTTCCGCCgggacctctctctctccctctctctctctccctctctctctctgctctacaGACATGGCTGATCAGCTGACAGAGGAACAAATCGCAGagtttAAGGAGGCGTTCTCGCTGTTCGATAAGGACGGAGACGGCACCATCACCACTAAAGAGCTCGGGACGGTGATGCGCTCTCTGGGACAGAACCCCACTGAGGCTGAGCTGCAGGACATGATCAACGAGGTGGACGCTGACGGTAACGGAACAATCGACTTCCCCGAGTTCTTGACCATGATGGCCAGAAAGATGAAGGACACAGACAGCGAGGAGGAGATCCGCGAGGCCTTCCGGGTGTTCGATAAGGATGGAAATGGCTACATCAGCGCTGCAGAACTGCGTCACGTCATGACGAACCTCGGCGAGAAGCTCACAGACGAGGAAGTGGATGAGATGATCAGAGAAGCCGATATCGACGGAGACGGTCAGGTGAACTACGAAGaatttgtaCAGATGATGACCGCGAAGTGAAGCTTCCTGTCAtcttagaagaaaaaaagttttatttaccTCTTATGGAAAAAAATCTAGTTATTGAGAATTGTTTCTGTACAGAGAACGATTGAATgttgaaattaaaatatcttcCTTCTGTCCACACGGAtataaaatcagaaaatctGCATGAAACAGTTAGTGCTCCCTCCCTGCAGCTCCACACtctgtgattaaagaaataaataccgGACCTCCAGCTTCCTACCTACACACGCAGCACATGTAAAGCTCGGGTGATGTGGTGATCTCATTTCTCTCCGTTTTCTCTTCTTCCTGCATGCAGAGTGAGAATGAACGTGATGTACCCGACTTTTTATATATCGAGACAAACAGCCACCGATgttaggcatgtgctgatattaaaCTTATACATTTCTTACAATAATTACGTAATATATTAgtcacaacaaaaaaa

Function

symbol description
calm1 Enables several functions, including N-terminal myristoylation domain binding activity; enzyme activator activity; and enzyme binding activity. Involved in several processes, including positive regulation of hydrolase activity; regulation of calcium ion transmembrane transport; and regulation of heart contraction. Located in microtubule cytoskeleton and sarcomere. Part of calcium channel complex and catalytic complex. Implicated in catecholaminergic polymorphic ventricular tachycardia 4 and long QT syndrome 14. Biomarker of Alzheimer's disease.

GO:

id name namespace
GO:0022400 regulation of rhodopsin mediated signaling pathway biological_process
GO:0001975 response to amphetamine biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0045087 innate immune response biological_process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion biological_process
GO:0051412 response to corticosterone biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0005513 detection of calcium ion biological_process
GO:0002027 regulation of heart rate biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030168 platelet activation biological_process
GO:0002576 platelet degranulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:1901841 regulation of high voltage-gated calcium channel activity biological_process
GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction biological_process
GO:0043647 inositol phosphate metabolic process biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:1901339 regulation of store-operated calcium channel activity biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0051000 positive regulation of nitric-oxide synthase activity biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity biological_process
GO:0032516 positive regulation of phosphoprotein phosphatase activity biological_process
GO:0016310 phosphorylation biological_process
GO:0046209 nitric oxide metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0060315 negative regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0034704 calcium channel complex cellular_component
GO:0030426 growth cone cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030017 sarcomere cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043274 phospholipase binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0031800 type 3 metabotropic glutamate receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008179 adenylate cyclase binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0050998 nitric-oxide synthase binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function
GO:0031432 titin binding molecular_function
GO:0044325 ion channel binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0031996 thioesterase binding molecular_function
GO:0031997 N-terminal myristoylation domain binding molecular_function

KEGG:

id description
K02183 CALM; calmodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911126.2 True 1024 mRNA 0.47 6 20392640 20403559

Neighbor

gene id symbol gene type direction distance location
trnar-acg_18 NA coding downstream 27882 20364686 ~ 20364758 (-)
trnae-uuc_12 NA coding downstream 28114 20364455 ~ 20364526 (-)
trnah-gug_22 NA coding downstream 34313 20358256 ~ 20358327 (-)
trnar-acg_17 NA coding downstream 37742 20354826 ~ 20354898 (-)
trnae-uuc_11 NA coding downstream 37972 20354597 ~ 20354668 (-)
trnae-uuc_14 NA coding upstream 15731 20419290 ~ 20419361 (-)
trnae-uuc_15 NA coding upstream 18296 20421855 ~ 20421926 (-)
trnae-uuc_16 NA coding upstream 19952 20423511 ~ 20423582 (-)
LOC113524747 LOC108258215 coding upstream 21726 20425285 ~ 20437474 (-)
LOC113524741 LOC108270747,LOC108263642,LOC108273692,LOC108270753,LOC108261406,LOC108257668,LOC108261292 coding upstream 163387 20566946 ~ 20575254 (-)
G298794 NA non-coding downstream 1923 20389084 ~ 20390717 (-)
G298758 NA non-coding downstream 144725 20247235 ~ 20247915 (-)
G298757 LOC108258230 non-coding downstream 146238 20243428 ~ 20246402 (-)
G298752 NA non-coding downstream 155406 20236928 ~ 20237234 (-)
LOC117599709 NA non-coding downstream 201996 20190083 ~ 20190644 (-)
G298801 NA non-coding upstream 25955 20429514 ~ 20430208 (-)
G298823 NA non-coding upstream 88450 20492009 ~ 20501140 (-)
LOC117599711 NA non-coding upstream 241830 20645389 ~ 20646391 (-)
G298878 NA non-coding upstream 272484 20676043 ~ 20677510 (-)
G298890 LOC108258199 non-coding upstream 301918 20705477 ~ 20730010 (-)
trnah-gug_25 NA other downstream 13735 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 14264 20378305 ~ 20378376 (-)
trnah-gug_24 NA other downstream 22361 20370208 ~ 20370279 (-)
trnah-gug_23 NA other downstream 27089 20365285 ~ 20365551 (-)
G298543 LOC108261534 other downstream 451641 19884160 ~ 19940999 (-)
LOC117599698 NA other upstream 36061 20439620 ~ 20442292 (-)
G298875 NA other upstream 252440 20655999 ~ 20664540 (-)
G299022 NA other upstream 669367 21072926 ~ 21073676 (-)
LOC117599725 NA other upstream 1188715 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 1568522 21972081 ~ 22067610 (-)

Expression


Co-expression Network