LOC113524747 (LOC108258215)


Basic Information

Item Value
gene id LOC113524747
gene name LOC108258215
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20425285 ~ 20437474 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911106.2
GTCTGTAAACTCACCACAGAAGAAGCTGAAGTGAGGGAGATGGGGATGTTTATGTTTCTCTCCTGAATGAACGGTTGAGTTTTTATCATTTCTGAGTAAACAAATATTTCTGGTTGGAAATTTTTAGGcgtatagattaaaaaaaaaagttaatccttgtgtgtgtatttgagctTCTGCGTTTAAAGCCATGAGAATCGGGACCTTTTAGACTTTTTGTAATGGAGTCAGCAGAGGTGCAGCCGAGCCCTTTCAGAAAATCTCTACACACTCCTGCTCGCTCACGGCTTTATGAGGATGTGAGGACAGAAACGTGTACGGGTTCAGGCTCTGTGGGACACATCAACACTGTGAACCATcagaaacatataaaaaaggaagaaactgAAGAGGAAGACGATCTCTGTAAGTCAACAGCGCACAATACAGTCCAGTCTGATGGTGAAGGGACATCCAGCGCTGTGGGAGACATCACACCTGTGAATGAACACAAACCTGTAATAAAGGAAGAACCTGAAGATGAAGACTATCtctGTGAAGGAACGTCGAGCCCTGTGGGACACAGCAGCACTGTGGACGAGCAGAATGAAGAATTTCAAATAATGCTTGTAAAAGAGGAAGAGTCTGAAGATGAAGGCAGCATCTGTACAGCGACAGTTTGTGAAATGGACGATGATCAGTTGCAAGTCTTCTCCTGCTCCTGGTGTTCACTTTCCTATACATCTCAAATTGACCTCGAAACACACATCAGAAGAAACCATAATGATGAATATGAGAAAGTGGTGATCTCAGGAGAGATTCCATATGAGAGTCTAATATTGACAAGAAGCTCCAGTATTCAGCAAATATCTTCTGATTCTGTCACCAGTAACAACTCTCATGGACAAATGCAGAAAGTCTATCCCTGTCTGGAGTGTGGGAATAGATTTACGAACAAGAGTAATCTTAAAgcacaccagcgcattcacacgggagagaagccgtatcagtgctcgcagtgtggaaagagttttactcGACAGAGTTCTCTCCAGCAGCACCAGGTGGTTCACACGGGAGAGAAGCCGCATCACTGCTTAGAGTGTGGAAAGACTTTCACTCGACAGAGCTCTCTCCAGCAACACCGGCGCATTCACACGGGGGAGAAGCCGCAtcactgctcagagtgtgggaaACGTTTTCCTCGACAGAGTGATCTCCAaaaacaccagcgcattcacacaggagagaagccctATCAGTGCTcccagtgtggaaagagttttagtCAAAAAGGTAATCTtcaaacacaccagcaaattCATACAGAAGAGAAACCATATCACTGCACACAGTGTGGGAAAAGTTTTACCTGGCAGAGTACTTTTCAaacacaccagcgcattcatGCGCGAAAAGCCATGTCAGTAGTCACAGTGTAAGAAGAGTTTTACCTGTCTGCGCCATCTCCAGTGACAGCAGCGCATTCGAATCATAGACAAGCTACAAGAGTTTCACGTATTCAGGTGTGTTTAATATACACAATTAACGTGGCCACTATTGGATTTCCAGCTGTCGAGgccataaaaatattaaagaatgttCTGTTGCATTTTTTAGATATTTGATTTGTCTCTTTAGCTGTAAGTTTGAAGTGGATTGGTAAATTGATAAACACAAaactctatttttatttgtatagtgcttttaacattggacgttgtcacaaagctgctttacagaaaacctTCACTAGTAATTTATGTTCCTTGAA
>XM_026911107.2
GTCTGTAAACTCACCACAGAAGAAGCTGAAGTGAGGGAGATGGGGATGTTTATGTTTCTCTCCTGAATGAACGGTTGAGTTTTTATCATTTCTGAGTAAACAAATATTTCTGGTTGGAAATTTTTAGGcgtatagattaaaaaaaaaagttaatccttgtgtgtgtatttgagctTCTGCGTTTAAAGCCATGAGAATCGGGACCTTTTAGACTTTTTGTAATGGAGTCAGCAGAGGTGCAGCCGAGCCCTTTCAGAAAATCTCTACACACTCCTGCTCGCTCACGGGTAAAATCTAGCCATATGTGTGCATGATCATTTTTTTTGAGTGACAGATTTAAATGGATTTCATATGAGCTTCACATATTTGGACATTTCCATAGTAAAGCTTTATGAGGATGTGAGGACAGAAACGTGTACGGGTTCAGGCTCTGTGGGACACATCAACACTGTGAACCATcagaaacatataaaaaaggaagaaactgAAGAGGAAGACGATCTCTGTAAGTCAACAGCGCACAATACAGTCCAGTCTGATGGTGAAGGGACATCCAGCGCTGTGGGAGACATCACACCTGTGAATGAACACAAACCTGTAATAAAGGAAGAACCTGAAGATGAAGACTATCtctGTGAAGGAACGTCGAGCCCTGTGGGACACAGCAGCACTGTGGACGAGCAGAATGAAGAATTTCAAATAATGCTTGTAAAAGAGGAAGAGTCTGAAGATGAAGGCAGCATCTGTACAGCGACAGTTTGTGAAATGGACGATGATCAGTTGCAAGTCTTCTCCTGCTCCTGGTGTTCACTTTCCTATACATCTCAAATTGACCTCGAAACACACATCAGAAGAAACCATAATGATGAATATGAGAAAGTGGTGATCTCAGGAGAGATTCCATATGAGAGTCTAATATTGACAAGAAGCTCCAGTATTCAGCAAATATCTTCTGATTCTGTCACCAGTAACAACTCTCATGGACAAATGCAGAAAGTCTATCCCTGTCTGGAGTGTGGGAATAGATTTACGAACAAGAGTAATCTTAAAgcacaccagcgcattcacacgggagagaagccgtatcagtgctcgcagtgtggaaagagttttactcGACAGAGTTCTCTCCAGCAGCACCAGGTGGTTCACACGGGAGAGAAGCCGCATCACTGCTTAGAGTGTGGAAAGACTTTCACTCGACAGAGCTCTCTCCAGCAACACCGGCGCATTCACACGGGGGAGAAGCCGCAtcactgctcagagtgtgggaaACGTTTTCCTCGACAGAGTGATCTCCAaaaacaccagcgcattcacacaggagagaagccctATCAGTGCTcccagtgtggaaagagttttagtCAAAAAGGTAATCTtcaaacacaccagcaaattCATACAGAAGAGAAACCATATCACTGCACACAGTGTGGGAAAAGTTTTACCTGGCAGAGTACTTTTCAaacacaccagcgcattcatGCGCGAAAAGCCATGTCAGTAGTCACAGTGTAAGAAGAGTTTTACCTGTCTGCGCCATCTCCAGTGACAGCAGCGCATTCGAATCATAGACAAGCTACAAGAGTTTCACGTATTCAGGTGTGTTTAATATACACAATTAACGTGGCCACTATTGGATTTCCAGCTGTCGAGgccataaaaatattaaagaatgttCTGTTGCATTTTTTAGATATTTGATTTGTCTCTTTAGCTGTAAGTTTGAAGTGGATTGGTAAATTGATAAACACAAaactctatttttatttgtatagtgcttttaacattggacgttgtcacaaagctgctttacagaaaacctTCACTAGTAATTTATGTTCCTTGAA
>XM_026911108.2
GTCTGTAAACTCACCACAGAAGAAGCTGAAGTGAGGGAGATGGGGATGTTTATGTTTCTCTCCTGAATGAACGGTTGAGTTTTTATCATTTCTGAGTAAACAAATATTTCTGGTTGGAAATTTTTAGGcgtatagattaaaaaaaaaagttaatccttgtgtgtgtatttgagctTCTGCGTTTAAAGCCATGAGAATCGGGACCTTTTAGACTTTTTGTAATGGAGTCAGCAGAGGTGCAGCCGAGCCCTTTCAGAAAATCTCTACACACTCCTGCTCGCTCACGGCTTTATGAGGATGTGAGGACAGAAACGTGTACGGGTTCAGGCTCTGTGGGACACATCAACACTGTGAACCATcagaaacatataaaaaaggaagaaactgAAGAGGAAGACGATCTCTGTGAAGGGACATCCAGCGCTGTGGGAGACATCACACCTGTGAATGAACACAAACCTGTAATAAAGGAAGAACCTGAAGATGAAGACTATCtctGTGAAGGAACGTCGAGCCCTGTGGGACACAGCAGCACTGTGGACGAGCAGAATGAAGAATTTCAAATAATGCTTGTAAAAGAGGAAGAGTCTGAAGATGAAGGCAGCATCTGTACAGCGACAGTTTGTGAAATGGACGATGATCAGTTGCAAGTCTTCTCCTGCTCCTGGTGTTCACTTTCCTATACATCTCAAATTGACCTCGAAACACACATCAGAAGAAACCATAATGATGAATATGAGAAAGTGGTGATCTCAGGAGAGATTCCATATGAGAGTCTAATATTGACAAGAAGCTCCAGTATTCAGCAAATATCTTCTGATTCTGTCACCAGTAACAACTCTCATGGACAAATGCAGAAAGTCTATCCCTGTCTGGAGTGTGGGAATAGATTTACGAACAAGAGTAATCTTAAAgcacaccagcgcattcacacgggagagaagccgtatcagtgctcgcagtgtggaaagagttttactcGACAGAGTTCTCTCCAGCAGCACCAGGTGGTTCACACGGGAGAGAAGCCGCATCACTGCTTAGAGTGTGGAAAGACTTTCACTCGACAGAGCTCTCTCCAGCAACACCGGCGCATTCACACGGGGGAGAAGCCGCAtcactgctcagagtgtgggaaACGTTTTCCTCGACAGAGTGATCTCCAaaaacaccagcgcattcacacaggagagaagccctATCAGTGCTcccagtgtggaaagagttttagtCAAAAAGGTAATCTtcaaacacaccagcaaattCATACAGAAGAGAAACCATATCACTGCACACAGTGTGGGAAAAGTTTTACCTGGCAGAGTACTTTTCAaacacaccagcgcattcatGCGCGAAAAGCCATGTCAGTAGTCACAGTGTAAGAAGAGTTTTACCTGTCTGCGCCATCTCCAGTGACAGCAGCGCATTCGAATCATAGACAAGCTACAAGAGTTTCACGTATTCAGGTGTGTTTAATATACACAATTAACGTGGCCACTATTGGATTTCCAGCTGTCGAGgccataaaaatattaaagaatgttCTGTTGCATTTTTTAGATATTTGATTTGTCTCTTTAGCTGTAAGTTTGAAGTGGATTGGTAAATTGATAAACACAAaactctatttttatttgtatagtgcttttaacattggacgttgtcacaaagctgctttacagaaaacctTCACTAGTAATTTATGTTCCTTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911106.2 False 1753 mRNA 0.43 6 20425285 20437474
XM_026911107.2 True 1853 mRNA 0.42 6 20425285 20437474
XM_026911108.2 False 1717 mRNA 0.43 6 20425285 20437474

Neighbor

gene id symbol gene type direction distance location
trnae-uuc_16 NA coding downstream 1703 20423511 ~ 20423582 (-)
trnae-uuc_15 NA coding downstream 3359 20421855 ~ 20421926 (-)
trnae-uuc_14 NA coding downstream 5924 20419290 ~ 20419361 (-)
LOC113524770 calm1,LOC102778633,LOC102293206,LOC107396020,LOC105896953 coding downstream 21726 20392640 ~ 20403559 (-)
trnar-acg_18 NA coding downstream 60527 20364686 ~ 20364758 (-)
LOC113524741 LOC108270747,LOC108263642,LOC108273692,LOC108270753,LOC108261406,LOC108257668,LOC108261292 coding upstream 129472 20566946 ~ 20575254 (-)
LOC117599679 LOC108258211 coding upstream 147193 20584667 ~ 20591786 (-)
LOC113524753 NA coding upstream 155967 20593441 ~ 20611269 (-)
LOC113524752 NA coding upstream 176248 20613722 ~ 20653212 (-)
LOC113524743 LOC108258194 coding upstream 304596 20742070 ~ 20750140 (-)
G298794 NA non-coding downstream 34568 20389084 ~ 20390717 (-)
G298758 NA non-coding downstream 177370 20247235 ~ 20247915 (-)
G298757 LOC108258230 non-coding downstream 178883 20243428 ~ 20246402 (-)
G298752 NA non-coding downstream 188051 20236928 ~ 20237234 (-)
LOC117599709 NA non-coding downstream 234641 20190083 ~ 20190644 (-)
G298823 NA non-coding upstream 54535 20492009 ~ 20501140 (-)
LOC117599711 NA non-coding upstream 207915 20645389 ~ 20646391 (-)
G298878 NA non-coding upstream 238569 20676043 ~ 20677510 (-)
G298890 LOC108258199 non-coding upstream 268003 20705477 ~ 20730010 (-)
G298906 flrt2,LOC108258011 non-coding upstream 317498 20754972 ~ 20888652 (-)
trnah-gug_25 NA other downstream 46380 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 46909 20378305 ~ 20378376 (-)
trnah-gug_24 NA other downstream 55006 20370208 ~ 20370279 (-)
trnah-gug_23 NA other downstream 59734 20365285 ~ 20365551 (-)
G298543 LOC108261534 other downstream 484286 19884160 ~ 19940999 (-)
LOC117599698 NA other upstream 2146 20439620 ~ 20442292 (-)
G298875 NA other upstream 218525 20655999 ~ 20664540 (-)
G299022 NA other upstream 635452 21072926 ~ 21073676 (-)
LOC117599725 NA other upstream 1154800 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 1534607 21972081 ~ 22067610 (-)

Expression


Co-expression Network