G298543 (LOC108261534)


Basic Information

Item Value
gene id G298543
gene name LOC108261534
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19884160 ~ 19940999 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU353574
AGTGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTACACTCTCCCCAAGAGGAAGCTCACAACCTCTGATAATGGAATGTTCTACTGTGCTGTGGCTGCATGTGGACAAATCCTCTTTAGTAATGGAACTGAAGTTAAAGTAAATCAAGTAGAAGAAAATAACCAttggattgtttttgttttaacaacCTCCAATATAATATCTATTATTGTAATCATGGTTCTGGTTGGAGTTTTacttaaacaaagaaaaggGGCTTCCAATGACCATCCAAATAACACAAATCAGGCTGATGATGAAGATGTCTTGAACTATGCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGAACCATGACGATGTTTATGcacaagttaaaataaaataaagagaaatgaattCAGATTTAAAGCACCAGATGCTGGAGATTTATTGCTGTAA
>TU353585
CATTGTCTCAACAGGAACGATGATCACAGTCCTTGTCGCTCTTTGTCTCTTAACATCAGtgaaaCCTTCTAACATCAAGGAGCTTCAAGTTCAAAAAGTAAAGCGTGgagaaaatgtttctataaaatGTGATGACTTGTCcagtgataaaaataaattagtttggTTCAAACAGAGTTTTGGAAAGGCTCCTCAGTGGGTAGGGAGAGAAGTGGAGAGCTCATTCAGACCCGGTGAAGGATTTAATGATGGACGCTTCAGtattagtgtaaataaaaatctgcttaatctcaacattaaagaaatcaaagaagaGGATACAGGAACATATTTCTGTGCACAATTGCTGGTATCTTCACTGTACTTTGGATCTGGAACCCTTTTGGTTGTTGAAGCTGAGGAGATGAAACAGCATCCTCCGACTGTAAAGGTGATGGAGAACGGAGAGTCGTTCACACTCCAGTGTTCAGTACAAGCATTTACTTCAAGCTGTGAAGAACAGAGTGTGTACTGGTTCAGACACAGCTCAGGAGAATCTCATCCAggaatcatttacactcatggaGACGGCAGTGATGAGTGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTACACTCTCCCCAAGAGGAAGCTCACAACCTCTGATAATGGAACGTTCTACTGTGCTGTGGCTGCATGTGGACAAATCCTCTTTAGTAATGGAACTGAAGTTAAAGTAAATCAAGTAGAAGGTAAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU353574 False 475 TUCP 0.37 4 19884160 19940999
TU353585 True 753 TUCP 0.42 3 19884807 19885795

Neighbor

gene id symbol gene type direction distance location
LOC117599680 NA coding downstream 6415 19876162 ~ 19877745 (-)
LOC117599694 LOC108261534 coding downstream 18498 19864134 ~ 19865662 (-)
LOC117599714 NA coding downstream 172109 19711647 ~ 19712051 (-)
LOC113523950 NA coding downstream 315719 19566942 ~ 19568441 (-)
LOC113523951 NA coding downstream 341414 19541505 ~ 19542746 (-)
LOC117599697 LOC108261534 coding upstream 164759 20105758 ~ 20107245 (-)
LOC113523908 LOC108261534 coding upstream 206872 20147871 ~ 20149473 (-)
nfkbiaa LOC108258222 coding upstream 335968 20276967 ~ 20279845 (-)
gtf2a1 gtf2a1,LOC107721813,LOC107658177 coding upstream 352413 20293412 ~ 20303747 (-)
trnae-uuc_5 NA coding upstream 368290 20309289 ~ 20309360 (-)
LOC117599713 NA non-coding downstream 56236 19826993 ~ 19827924 (-)
G298436 LOC108261089,LOC108262065 non-coding downstream 316602 19358070 ~ 19567558 (-)
G298444 NA non-coding downstream 341399 19377665 ~ 19542761 (-)
G298449 LOC108257688 non-coding downstream 470226 19409824 ~ 19413934 (-)
G298400 NA non-coding downstream 558453 19325497 ~ 19325707 (-)
G298549 NA non-coding upstream 12945 19953944 ~ 19954298 (-)
LOC117599712 NA non-coding upstream 242059 20183058 ~ 20183574 (-)
LOC117599709 NA non-coding upstream 249084 20190083 ~ 20190644 (-)
G298752 NA non-coding upstream 295929 20236928 ~ 20237234 (-)
G298757 LOC108258230 non-coding upstream 302429 20243428 ~ 20246402 (-)
G298475 NA other downstream 292723 19590959 ~ 19591437 (-)
LOC113524722 NA other downstream 410184 19472020 ~ 19473976 (-)
LOC113524711 NA other downstream 432556 19429191 ~ 19451604 (-)
LOC113525604 LOC108258223 other downstream 473786 19374773 ~ 19410374 (-)
ubr7 LOC108257828,LOC108411326 other downstream 800649 19070460 ~ 19083511 (-)
trnah-gug_23 NA other upstream 424286 20365285 ~ 20365551 (-)
trnah-gug_24 NA other upstream 429209 20370208 ~ 20370279 (-)
trnae-uuc_13 NA other upstream 437306 20378305 ~ 20378376 (-)
trnah-gug_25 NA other upstream 437835 20378834 ~ 20378905 (-)
LOC117599698 NA other upstream 498621 20439620 ~ 20442292 (-)

Expression


Co-expression Network