G298444


Basic Information

Item Value
gene id G298444
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19377665 ~ 19542761 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU353403
GTCTAAACAGGAACGATGATCACACTCTTTGTCGCTCTTTACTCTCTGCTTTGTCTCTGCACAGTTGtaaaaacttCTGACATCAAGGAGCTTCACGTGAAAACAGTAAAGCCTGGAGAAAATGTAACTATGGAGTGTAACATTAGCAGGGTCAAAGACAAAGATAATTTATTTTGGTACAGACAGAGTTTTGGAAAATTGCCTCAGTTATTTGCAAGACCATACAAGAGCAGTTTGGGCTACACATTTGATGAGGGATTTAAAGATAGCC
>TU353414
GTCTAAACAGGACCGATGATCACACTCTTTGTCGCTCTTTACTCTCTGCTTTGTCTCTGCACAGCTGtaaaaacttCTGACATCAAGGAGCTTCACGTGAAAACATTAAAGCGTGGAGAAAATGTAACTATGGAGTGTGACATTAGCAGGATCAAAAACAAAGATAAGTTAGTTTGGTGCAGACAGAGTTTTGGAAAAGTGCCTCAGTTTTTAGCAAGACATTATGGGCAAAGTAATTACAGATTTGATGAGGGATTTAAAGATAGCCG

Function

GO:

id name namespace
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU353403 True 271 lncRNA 0.39 2 19377665 19451281
TU353414 False 269 lncRNA 0.39 3 19518847 19542761

Neighbor

gene id symbol gene type direction distance location
LOC113524709 nitr1,LOC108261534 coding downstream 17815 19357778 ~ 19359850 (-)
LOC113547659 NA coding downstream 56175 19314727 ~ 19321490 (-)
LOC113547703 NA coding downstream 79637 19277991 ~ 19298028 (-)
LOC113547697 NA coding downstream 110656 19265827 ~ 19267009 (-)
cdca4 cdca4 coding downstream 138348 19232195 ~ 19239317 (-)
LOC113523950 NA coding upstream 24181 19566942 ~ 19568441 (-)
LOC117599714 NA coding upstream 168886 19711647 ~ 19712051 (-)
LOC117599694 LOC108261534 coding upstream 321373 19864134 ~ 19865662 (-)
LOC117599680 NA coding upstream 333401 19876162 ~ 19877745 (-)
LOC117599719 LOC108261534 coding upstream 381865 19924626 ~ 19931253 (-)
G298400 NA non-coding downstream 51958 19325497 ~ 19325707 (-)
G298358 NA non-coding downstream 150980 19226399 ~ 19226685 (-)
G298350 NA non-coding downstream 157984 19219117 ~ 19219681 (-)
G298349 NA non-coding downstream 160426 19216638 ~ 19217239 (-)
G298309 NA non-coding downstream 289010 19088101 ~ 19088655 (-)
LOC117599713 NA non-coding upstream 284232 19826993 ~ 19827924 (-)
G298549 NA non-coding upstream 411183 19953944 ~ 19954298 (-)
LOC117599712 NA non-coding upstream 640297 20183058 ~ 20183574 (-)
LOC117599709 NA non-coding upstream 647322 20190083 ~ 20190644 (-)
G298752 NA non-coding upstream 694167 20236928 ~ 20237234 (-)
ubr7 LOC108257828,LOC108411326 other downstream 294154 19070460 ~ 19083511 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other downstream 1271672 18072545 ~ 18105993 (-)
acot20 LOC108257587,LOC108257591 other downstream 1662393 17707286 ~ 17715272 (-)
esr1 esr1 other downstream 1871007 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 2141536 17233977 ~ 17236129 (-)
G298475 NA other upstream 48198 19590959 ~ 19591437 (-)
G298543 LOC108261534 other upstream 341399 19884160 ~ 19940999 (-)
trnah-gug_23 NA other upstream 822524 20365285 ~ 20365551 (-)
trnah-gug_24 NA other upstream 827447 20370208 ~ 20370279 (-)
trnae-uuc_13 NA other upstream 835544 20378305 ~ 20378376 (-)

Expression


Co-expression Network