G298350


Basic Information

Item Value
gene id G298350
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19219117 ~ 19219681 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU353275
aaacgccaaaaagtgggtagttccacaattagttcaggtactatgaaaaggttcctgcggtgcgaaaggccctaaagATGACACTACAGAAATAATTCTGGATGTCTGACGATACATTTCAGGCTCAATCCAGTCCTCAGATCTGCATCTTAAATCTCTGAGACTTTATAAGAAAcgttttattatgttttatcttTTCCACGGGACGGTGTGGGACGGTAGCGAAGCCCTGAGCGCGTGTTTTATCATCGGCTGTGTGAGTCgtactgtaaaacaaaacaacaaaaaaaaggttcccTGAACTGAATTTGGTTCTCCTTCCTTACACAGTACCTTAACAGAACCCAAACAGGGACTTGTGGGCGGAGCTCAAAAAATAGCGCAGCTCATCGATTGGTCAAGTGAAACTAACCTAAATTTTCtgcacaattttaaaataatcaaacgTTTTACAGtcgtttttaatttatttacccTACAGTACTGTTTTCGTCTCACGGATATTTGACGCTACTTAAATTTCTTACTCAAGATTCATGTAAAATCCACCATTTTTAATTCTAGt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU353275 True 565 lncRNA 0.39 1 19219117 19219681

Neighbor

gene id symbol gene type direction distance location
ahsa1a LOC108257911 coding downstream 5166 19207134 ~ 19213951 (-)
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding downstream 14025 19186674 ~ 19205092 (-)
si:dkey-177p2.18 LOC108257913,LOC107721335,LOC108411318 coding downstream 35502 19171017 ~ 19183615 (-)
chga chga coding downstream 55542 19139086 ~ 19163575 (-)
tmem251 tmem251 coding downstream 125710 19089576 ~ 19093407 (-)
si:dkey-177p2.6 LOC108257909 coding upstream 1327 19221008 ~ 19230373 (-)
cdca4 cdca4 coding upstream 12514 19232195 ~ 19239317 (-)
LOC113547697 NA coding upstream 46146 19265827 ~ 19267009 (-)
LOC113547703 NA coding upstream 58310 19277991 ~ 19298028 (-)
LOC113547659 NA coding upstream 95046 19314727 ~ 19321490 (-)
G298349 NA non-coding downstream 1878 19216638 ~ 19217239 (-)
G298309 NA non-coding downstream 130462 19088101 ~ 19088655 (-)
G298286 NA non-coding downstream 152185 19002340 ~ 19066932 (-)
G298243 NA non-coding downstream 388826 18829534 ~ 18830291 (-)
G297969 NA non-coding downstream 657283 18561597 ~ 18561834 (-)
G298358 NA non-coding upstream 6718 19226399 ~ 19226685 (-)
G298400 NA non-coding upstream 105816 19325497 ~ 19325707 (-)
G298436 LOC108261089,LOC108262065 non-coding upstream 138389 19358070 ~ 19567558 (-)
G298444 NA non-coding upstream 157984 19377665 ~ 19542761 (-)
G298449 LOC108257688 non-coding upstream 190143 19409824 ~ 19413934 (-)
ubr7 LOC108257828,LOC108411326 other downstream 135606 19070460 ~ 19083511 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other downstream 1113124 18072545 ~ 18105993 (-)
acot20 LOC108257587,LOC108257591 other downstream 1503845 17707286 ~ 17715272 (-)
esr1 esr1 other downstream 1712459 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 1982988 17233977 ~ 17236129 (-)
LOC113525604 LOC108258223 other upstream 155092 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 209510 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 252339 19472020 ~ 19473976 (-)
G298475 NA other upstream 371278 19590959 ~ 19591437 (-)
G298543 LOC108261534 other upstream 664479 19884160 ~ 19940999 (-)

Expression


Co-expression Network