LOC113547703


Basic Information

Item Value
gene id LOC113547703
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19277991 ~ 19298028 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313940.1
GCTTTGTTGTTCTGCTGTGTAGATCACAGTTCAGCTCTGGTGAGATCACACAAACTGAAACACAGCTGTGTGTAACAAATCTCCTGCTCATTCACAGTCACCATGGCAGATATTTTTCTGAAGAAATACATGAGTGAATTTATACAAAAGATAAGAAATCCAATGGGATTGGCTGATGATCTGTATGCCAAGAACTTTATTCAAAAGGAAATGTATCAAAACATCAAAACCCAGGAAACCAACCTAAGAAAAACTCGTGAAATTTATGAGAGTCTCAATAGCACAAAGCACTATGACTTCATGTGTGATTGGTTGAAGGAGAATGAGTCAGATGTGTTTGAAGAACTGGaacttttacacagaaagagagacactgAGGCTGAAGCACCACAGAaaaaaaaagccagactcgAGAATGAGGATGAAACAGATTTTACAATATTTCCTGATCTTAAGAGGATATCAACATTCGCCAAACTGGAGAGATGGGTGTCTGAACCAGAAATCAGCCAAAAGCTGATTAGTGACTTGGAGAGACAACTTGGCGATAAAGGCATGgcagatttgaaaaaaaaattaaaggacaAAGAacccaaaaatattttatgcttCAATGCTAACAATATTGATAACATCAGGAAAAATAAGGAACTTGACAAGTTTCTcagcaaaacaaataacacagaAATTCCTAAACTGACATTTAGCATGTTTTTTAAGAAAGGTGGTTCTGTGTCATCAGGAAATAATGCTCAAAGCTCAGACATGCAGGAAACACGCATTCATGAGATGAAAGAGCAACCTCAAAGATTCAATGTTCCAAATGTCCCAAGACATATAGATGTATCGCTGTCCCAATACGACccattcaccaaaaaaaaaccactagaAGATGATCTTGGAAGTACAGACATGAAGGAACCATGGACTGATAAGATAGATGAGCAACTTAAAAGATCAAATGTTCCAATGCATGAAGATGAATCTCTGCACCAAAAGGAGCAAATCACCAAAAAAGAAACACCACTAGAAGATAGACTTGGAAGCACGGACATGCAGGACGCAAACATTGATGAGATAGATGAGGAGTCTCAAAGATCAAATGTTCCAATGCATATTGCATCTCTGCACCAAGATGAGTCAatcatcaaaaacaaaatgccaCTAGAAGACAGATGTGGAAACATGAACATGCAGCACAATGAGCAAGCAAATATGCAGGTTAATCCTGAGCCTTTTTCTTCGAAGCAGCTGCAGGACAACAGTCCAGGCTCAGCATCAAAGTATAGCTACTCTACCAGTTTAGAGTATTTGccacaaaacaataaaagattACCAGAGGAGGAAGTCCTGGCTGTGttcagtgacactggagacaagGATATTATGATTCATGAGAATAAAGACAATGAGAATGAGTCCAAAACCACTGAACAGCCCTGTGGTGGATCATTCCTCCAAATGCACCATGAGGTCAAAGCTGATGCACCATCACAGGAACCTACAGACATGCAGGGTACACACATTGATGAAAAGGAAGAACAATCTCAAAGATCAAATGTTCCAATGTATGAAGatttatctctgtaccaaaATGACCCATTCACCAAAAAAGAAACACCACTAGAAAACAGATGTGGAAGCACGGACATGCAGGAAACACGCATTCATGAGATGAAAGAGCAACCTCAAAGATTCAATGTTCCAAATGTCCCAAGACATATAGATGTATCGCTGTCCCAATACGACCCATTCATCAAAAAAGAACCACTAGAAGATGGACTTGGAAGTACAGACATGAAGGAACCATGGACTGATAAGATAGATGAGCAACTTATAAGATCAAATGTTCCAATGCATGAAGAGGAATCTCGGTACCAAAAGGATCAAATCACCAAAAAAGAAACACCACTAGAAGATAGACTTGGAAGCACGGACATGCAGGACACAAACATTGATGAGATAGATGAGGAGTCTCAAAGATCAAATGTTCCAATGCATATTGCATCTCTGCACCAAGATGAGTCAatcatcaaaaacaaaatgccaCTAGAAGACAGATGTGGAAACATGAACATGCAGCACAATGAGCAAGCAAATATGCAGGTTAATCCTGAGCCTTTTTCTTCGAAGCAGCTGCAGGACAACAGTCCAGGCTCAGCATCAAAGTATAGCTACTCTACCAGTTTAGAGTATTTGccacaaaacaataaaagattACCAGAGGAGGAAGTCCTGGCTGTGttcagtgacactggagacaagGATATTATGATTCATGAGAATAAAGACAATGAGAATGAGTCCAAAACCACTGAACAGCCCTGTGGTGGATCATTCCTCCAAATGCACCATGAGGTCAAAGCTGATGCACCATCACAGGAACCTACAGACATGCAGGGTACACACATTGATGAAAAGGAAGAACAATCTCAAAGATCAAATGTTCCAATGTATGAAGatttatctctgtaccaaaATGACCCATTCACCAAAAAAGAAACACCACTAGAAAACAGATGTGGAAGCACGGACATGCAGGAAACACGCATTCATGAGATGAAAGAGCAACCTCAAAGATTCAATGTTCCAAATGTCCCAAGACATATAGATGTATCGCTGTCCCAATACAACCCACTCATCAAAAAAGAACCACTAGAAGATGGACTTGGAAGTACAGACATGAAGGAACCATGGACTGATAAGATAGATGAGCAACTTAAAAGATCAAATGTTCCAATGCATAAAGAGGAATCTCTGCACCAAAAGGATCAAATCACCAAAAAAGAAACACCACTAGAAGATGGACTTGGAAGCACAGACATGCAGAATACACACAATGATAAGATAGATGAGGAACATCAAAAATCAAATGTTCCAATGCATGCTGCATGTCTGCACCAAGATGAGTCAatcatcaaaaacaaaatgccaCTAGAAGACAGATGTGGAAACATGAACATGCAGCACAATGAGCAAGCAAATATGCAGGTTAATCCTGAGCCTTTTTCTTCGAAGCAGCTGCAGGACAACAGTCCAGGCTCAGCATCAAAGTATACACAAAGCAATAGCACAGAGTTCTTGGCTCAGTATAAAAACACAGCCATACTAGCTCCAAACAGAGATGTGAAAGATCAGACTGAAGCTacaaaaaagagggaaaagtcAAAATGccagaaggaaaagaagaaaaaatcaaaGGATGACCTGCTTCTTGACTGGGCAATGAGACAATGTAATGACCGTAAAGAAGAGTTAAAGAACATATTGGACCAGATCTCAATTATAAACATGGCAGAACACAGCGATTATCCATGCTTTACTGCTGAAAATGTCATGGTGTACAAGTACTTAACTCCTGAGAGCCAAATTATCTTTATTGCCGATGACAGTTCCTCCATCAGCACTATGACCATGGTCCATTAtcacatgtttgtgtgtaacaTTAAGAAAGCAATACTCTTAGGTCCTAAAAAACAAGATGAACAGGAGATTCAATATATTGAATCTAAAGTGCCTGTAGATACGTGTACAGGCTTTATTTTCAAAGCGTTCGCTCCTGCTCTTACAGTTTACAAAAAGattcagaaagaagaaaagttgTATTCTCTCATCTGAGTGCAGTGAAAAATCCCAAAACCTGTAACCGCTCATGtcaacaaatatatacatatatatataaatattgtcaAACTAGCGGGCTGTAAATtcagctactgacaaaatattaatgtgACACGGTAACCATGTGTCTTTCCaaaagaactaatttagggatTTCACAGCAAGACTACTTATACTCACAACAGAATGCTTATGCAATCAcaccttttatatttttatttgtaaataatttggcAAACTTTATTGGTTTTTTCCCACTTGAATATTATTGGTTATTTTGTGTCGATTCATGACCTAAAATCCCAGTTAGGTCCATTTCAGTTTTGTATCactgcaaaatgtggaaaagttcaagggggtgaacaTTTACAGTAGGGTCTGTGGGATTATTTTCCCCGTGTCAAGGTAAACAGGATGTGTTGGTGGTGGTTGATAAGTTTTCACATTGGGTTTGAAGCCTTTCCAACCAAAACAGGGATAGCCATTCATTCAGACCAGTGCATTCATTCAGACCACAGAACTCACTTTACTGCCCAAGTCATGCAGGAAGTCATGAAAATGTTGAATGTTCAATGGACGTTTCACTGCCCATATAGGCCTCAGGCTTCTGGACAGGTCGAGTGTCAAAATCAGACTTTGAAACAGCGATTGTCATAGTTACACCAGAGTGGGGTGTTGTGGGTGGATGCGTTGCCAGCTGTTTTGTGCAGTATTTGATCCACATCTATGAGAGGGGTCTCAGCCCATACGGGATCATTATGGGTCGACCAATGGCCCTACCGGGGACAATCGATCTAAGACAAGCAAATGTGCATCTTACCTCTAATGCGCTAATGAAGTATTGTGAAGAGCTCACTGAAGCTGTTAGTGCTGCGCAACAGCATGTCCAGGAGGCATGGACCTCCCCTAAAAACGTGCTATTGTGGGGACATGCTATTGTGCCAGGACAGTTGGTAATGATCAAAAACCACACAGCTGGTTAGAGGCAAAATGGAAAGGCCCTTTCCAAGTTCTCTTAGTAACTGTTTCGGCAGTGTTGTGTCAGTTTGAGAGGATCCGATGGCATTTAGGCCGCGGGGGTTAAACTCAAAGTGAAGATTCCCTTTTCCCCAAAATGCGATTAGCGCTCCCTACTCCTCTCAGTGGACAGGACCCAAGTTAGGCAGGGAGAGACAGTAACCCCTTATAGTGTTAATTTATGCAACATTTGAGCCTACAATATCTGGTTAAATTCCAGTCTATATATGTGTTTTCAATAAAAGATTTGGAGAGAAAACAAATCTTTTTGAAGTtctggaaaaaaggaaaagatgcTTCTGTGTCTGCTGTAAGATACtgctgtcgtgtgtgtgtgtgtgtgtgtgtgtgtttgtggggttttttgcAGGAGAAACCAGGTGAGGCGTATATGAAGTTGGTGCAGGTGCTACGAGAAAACCAAAAGTCTTCTACTGCATCCATCGGTTTCCACTCACTCCTAACTGGCCCCAGGACACACTTCAACCCTGTCCACGCTGTGCTGAAGCAAGACCCATCCGTCTTTGCCATCATCACCGCACAAAAGACTGATTCTATAGATTAATTAATCAGGCAGTATCACTGGATACAATTTAGACACAGTCACTGGTTTCATGTTATATAACATTACATATGCGGCCACTGCACCTCAGGGTTATTTGATTAGGTATATCAAGAAGCCTAGTTGTCCTATTGTGCATAGTGTATAGATCTAGATGAGATGCATGGCCATGTTAAGTGTGTCGATCAGTTGACAGTGACTGGTTAGGTGCCTGGCTACGTTCCTGGTGGCAAATGGTGAAATTCGACTGTTTCATGGTTTTCTTTGTCATCCTCCTGTTAGCTTGTGTTATGATTCACTGTTGCTTCATGTGTAATTCTAAGAGCATGAAACAGGTAGCAGAAACTACGGTTATGTTGACTCTTACTTTTAGGCCTGATGCCTACATCTAATATGACATTATTTTTCTATGCTTGGTAGAAAGGTAAGtccttggaatcaactccagatctttgatctccttaatttgtcatgaaataatgaggaaacaggccacacatGGCCATGAAATTGCTTATCAGTCAAccgtccaattacttttgagatCGATCTAAGACAACCCCTTgaataatcaaaaaaaaatctgtgaaaatggagagactctgtaaaaaatggctgtaattcctttaacagttaatgcaatattttggtTAAACCCCtcgaattaaagctgaaagtctccacttcaatcacatcttgattgcttcatttcaaatccattgtggattatgaaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008146 sulfotransferase activity molecular_function
GO:0016782 transferase activity, transferring sulfur-containing groups molecular_function

KEGG:

id description
ko00071 Fatty acid degradation
ko00380 Tryptophan metabolism
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313940.1 True 5938 mRNA 0.40 5 19277991 19298028

Neighbor

gene id symbol gene type direction distance location
LOC113547697 NA coding downstream 10982 19265827 ~ 19267009 (-)
cdca4 cdca4 coding downstream 38674 19232195 ~ 19239317 (-)
si:dkey-177p2.6 LOC108257909 coding downstream 47618 19221008 ~ 19230373 (-)
ahsa1a LOC108257911 coding downstream 64040 19207134 ~ 19213951 (-)
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding downstream 72899 19186674 ~ 19205092 (-)
LOC113547659 NA coding upstream 16699 19314727 ~ 19321490 (-)
LOC113524709 nitr1,LOC108261534 coding upstream 59750 19357778 ~ 19359850 (-)
LOC117599702 NA coding upstream 113853 19411881 ~ 19445336 (-)
LOC113523941 NA coding upstream 185861 19483889 ~ 19520280 (-)
LOC113523951 NA coding upstream 243477 19541505 ~ 19542746 (-)
G298358 NA non-coding downstream 51306 19226399 ~ 19226685 (-)
G298350 NA non-coding downstream 58310 19219117 ~ 19219681 (-)
G298349 NA non-coding downstream 60752 19216638 ~ 19217239 (-)
G298309 NA non-coding downstream 189336 19088101 ~ 19088655 (-)
G298286 NA non-coding downstream 211059 19002340 ~ 19066932 (-)
G298400 NA non-coding upstream 27469 19325497 ~ 19325707 (-)
G298436 LOC108261089,LOC108262065 non-coding upstream 60042 19358070 ~ 19567558 (-)
G298444 NA non-coding upstream 79637 19377665 ~ 19542761 (-)
G298449 LOC108257688 non-coding upstream 111796 19409824 ~ 19413934 (-)
LOC117599713 NA non-coding upstream 528965 19826993 ~ 19827924 (-)
ubr7 LOC108257828,LOC108411326 other downstream 194480 19070460 ~ 19083511 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other downstream 1171998 18072545 ~ 18105993 (-)
acot20 LOC108257587,LOC108257591 other downstream 1562719 17707286 ~ 17715272 (-)
esr1 esr1 other downstream 1771333 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 2041862 17233977 ~ 17236129 (-)
LOC113525604 LOC108258223 other upstream 76745 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 131163 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 173992 19472020 ~ 19473976 (-)
G298475 NA other upstream 292931 19590959 ~ 19591437 (-)
G298543 LOC108261534 other upstream 586132 19884160 ~ 19940999 (-)

Expression


Co-expression Network