LOC113523941


Basic Information

Item Value
gene id LOC113523941
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19483889 ~ 19520280 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910035.2
CTCACTCAGCTATCCAGTAAGTTCCACTCCTCCACACAGTGACCCCCGGACCACGACGTGATGTTGAGCTAATGGACCAATCAAATCAGTCCACAGCTTCAAAACATCCAATCAGGCGTGAGTCTGGACCTGGTTTTCTACTGAACACACAAGTTCATTACCTCACTATCACTTTGTCTAAACAGGAACGATGATCGCACTCTTTGTCGCTCTTTACTCTCTGCTTTGTCTCTGCACAGCTGCAAAATCTTCTGACATCAAGGAGCTTCACGTGAAAACAGTAAAGCGTGGAGAAAATGTAACTATGGAGTGTGACATCAGCAGGGtcacaaacaaatataatttagtTTGGTGCAGACAGAGTTTTGGAAAAGTACCTAAGTTTTTAGCAAGACGTTACGgtcaaaataattacaaatttgCTGAGGGATTTAAAGATAGCCGCTTCAGTATTACTGTAAATGACCATAAGTTTGATCTCAACATTATCAAAATGGTAGAAGATGATGGAGGAGAATATTTCTGTATAGAACTGGATGGAAGTTTACTAAAGTTCACATCTGGAACACGTCTTCAATTTGAAGgtaAAGAGATGAAACTCTGTCCTACACCTGGAACGGTTAACAAGAACACAGATTCTGCTACACTCCAGGGTTCAGACAGCAGCGATGGAAAAGgtaAAGAGATGAAACTCTGTCCTACACCTGGAACGGTTAACAAGAGCACAGATTCTGGTACACTCCAGGGTTCAGACAGCAGAGATGGAAAAGgaAATGAATATTGGATTATTGCCTTAGCAGCCTCCATAATAATATCTCTTATTCTAATCGTCGTTCTGATtggagttttatttaaaaatcaaagaaaagGTGCTTCATCAAGAAACCATCAAATTCCCACCAATCAGGCTGATGATGAAGATGCTTTGAACTATGCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACCTCCAGAGACAAGAGCCATGAAGATGTTTATGcacaagttaaaataaaatagatgaagagaaatgacttcacacttgaaatacaatataaatacaattattCACCCAGTTTGTAGACAGATGTGTTATATTttaatcagacaaaaacatttttattgctgtaagTTTTATCACCATTTCCAAACCTTTGTAATGTACTAATTTGCCTTACTTGATGGAcgtatttgttttttaatttatttaatgatttttatcccttttattttaattttattttcatta
>XM_034313559.1
CTTCATTAAACTTCTTCTATCAGAGAGGTTCCAGCACACAGGACTGATAGAGCTCCAGTAGATCATATCTGTAAAGTCATGTGACTCATCACAGCATCAGAATAGACAAGAATTCACTGTGAGCTTCACATCTCATTACAGCTAATGGACCAATCAAATCAGTCCACAGCTTCAAAACATCCAATCAGGTGTGAGTCTGGACCTGGTTTTCTACTGAACACACAAGTTCATTACCTCACTATCACTTTGTCTAAACAGGAACGATGATCACACTCTTTGTCGCTCTTTACTCTCTGCTTTGTCTCTGCACAGCTGCAAAATCTTCTGACATCAAGGAGCTTCACGTGAAAACAGTAAAGCGTGGAGAAAATGTAACTATGGAGTGTGACATCAGCAGGGtcacaaacaaatataatttagtTTGGTGCAGACAGAGTTTTGGAAAAGTACCTAAGTTTTTAGCAAGACGTTACGgtcaaaataattacaaatttgCTGAGGGATTTAAAGATAGCCGCTTCAGTATTACTGTAAATGACCATAAGTTTGATCTCAACATTATCAAAATGGTAGAAGATGATGGAGGAGAATATTTCTGTATAGAACTGGATGGAAGTTTACTAAAGTTCACATCTGGAACACGTCTTCAATTTGAAGgtaAAGAGATGAAACTCTGTCCTACACCTGGAACGGTTAACAAGAACACAGATTCTGCTACACTCCAGGGTTCAGACAGCAGCGATGGAAAAGgtaAAGAGATGAAACTCTGTCCTACACCTGGAACGGTTAACAAGAGCACAGATTCTGGTACACTCCAGGGTTCAGACAGCAGAGATGGAAAAGgaAATGAATATTGGATTATTGCCTTAGCAGCCTCCATAATAATATCTCTTATTCTAATCGTCGTTCTGATtggagttttatttaaaaatcaaagaaaagGTGCTTCATCAAGAAACCATCAAATTCCCACCAATCAGGCTGATGATGAAGATGCTTTGAACTATGCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACCTCCAGAGACAAGAGCCATGAAGATGTTTATGcacaagttaaaataaaatagatgaagagaaatgacttcacacttgaaatacaatataaatacaattattCACCCAGTTTGTAGACAGATGTGTTATATTttaatcagacaaaaacatttttattgctgtaagTTTTATCACCATTTCCAAACCTTTGTAATGTACTAATTTGCCTTACTTGATGGAcgtatttgttttttaatttatttaatgatttttatcccttttattttaattttattttcatta

Function

GO:

id name namespace
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910035.2 False 1256 mRNA 0.37 8 19483889 19520280
XM_034313559.1 True 1329 mRNA 0.37 7 19483889 19519464

Neighbor

gene id symbol gene type direction distance location
LOC117599702 NA coding downstream 38553 19411881 ~ 19445336 (-)
LOC113524709 nitr1,LOC108261534 coding downstream 124039 19357778 ~ 19359850 (-)
LOC113547659 NA coding downstream 162399 19314727 ~ 19321490 (-)
LOC113547703 NA coding downstream 185861 19277991 ~ 19298028 (-)
LOC113547697 NA coding downstream 216880 19265827 ~ 19267009 (-)
LOC113523951 NA coding upstream 21225 19541505 ~ 19542746 (-)
LOC113523950 NA coding upstream 46662 19566942 ~ 19568441 (-)
LOC117599714 NA coding upstream 191367 19711647 ~ 19712051 (-)
LOC117599694 LOC108261534 coding upstream 343854 19864134 ~ 19865662 (-)
LOC117599680 NA coding upstream 355882 19876162 ~ 19877745 (-)
G298449 LOC108257688 non-coding downstream 69955 19409824 ~ 19413934 (-)
G298400 NA non-coding downstream 158182 19325497 ~ 19325707 (-)
G298358 NA non-coding downstream 257204 19226399 ~ 19226685 (-)
G298350 NA non-coding downstream 264208 19219117 ~ 19219681 (-)
G298349 NA non-coding downstream 266650 19216638 ~ 19217239 (-)
LOC117599713 NA non-coding upstream 306713 19826993 ~ 19827924 (-)
G298549 NA non-coding upstream 433664 19953944 ~ 19954298 (-)
LOC117599712 NA non-coding upstream 662778 20183058 ~ 20183574 (-)
LOC117599709 NA non-coding upstream 669803 20190083 ~ 20190644 (-)
G298752 NA non-coding upstream 716648 20236928 ~ 20237234 (-)
LOC113524722 NA other downstream 9913 19472020 ~ 19473976 (-)
LOC113524711 NA other downstream 32285 19429191 ~ 19451604 (-)
LOC113525604 LOC108258223 other downstream 73515 19374773 ~ 19410374 (-)
ubr7 LOC108257828,LOC108411326 other downstream 400378 19070460 ~ 19083511 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other downstream 1377896 18072545 ~ 18105993 (-)
G298475 NA other upstream 70679 19590959 ~ 19591437 (-)
G298543 LOC108261534 other upstream 363880 19884160 ~ 19940999 (-)
trnah-gug_23 NA other upstream 845005 20365285 ~ 20365551 (-)
trnah-gug_24 NA other upstream 849928 20370208 ~ 20370279 (-)
trnae-uuc_13 NA other upstream 858025 20378305 ~ 20378376 (-)

Expression


Co-expression Network