G298549


Basic Information

Item Value
gene id G298549
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19953944 ~ 19954298 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU353600
ACAGGAACGATGATCACAGTCCTTGTCGCTCTTTGTCTCTTAACATCAGtgaaaccTTCTAACACCAAGAAGCTTCAAGTTCAAAAAGTAAAGCATGGggaaaatgtttctataaaatGTGATGACTTGTTTACTTacacatatgattttttttggtgCAAACAGAGTTTTGGAAAGGCTCCTCAGTCGGTAGGGAGTGTAGTGGAGAGCTCATTCAGACCTGGTTCAGGATTTAATGATGGACGTTTCAGtatt

Function

GO: NA

KEGG:

id description
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU353600 True 255 lncRNA 0.39 2 19953944 19954298

Neighbor

gene id symbol gene type direction distance location
LOC117599719 LOC108261534 coding downstream 22691 19924626 ~ 19931253 (-)
LOC117599680 NA coding downstream 76199 19876162 ~ 19877745 (-)
LOC117599694 LOC108261534 coding downstream 88282 19864134 ~ 19865662 (-)
LOC117599714 NA coding downstream 241893 19711647 ~ 19712051 (-)
LOC113523950 NA coding downstream 385503 19566942 ~ 19568441 (-)
LOC117599697 LOC108261534 coding upstream 151460 20105758 ~ 20107245 (-)
LOC113523908 LOC108261534 coding upstream 193573 20147871 ~ 20149473 (-)
nfkbiaa LOC108258222 coding upstream 322669 20276967 ~ 20279845 (-)
gtf2a1 gtf2a1,LOC107721813,LOC107658177 coding upstream 339114 20293412 ~ 20303747 (-)
trnae-uuc_5 NA coding upstream 354991 20309289 ~ 20309360 (-)
LOC117599713 NA non-coding downstream 126020 19826993 ~ 19827924 (-)
G298436 LOC108261089,LOC108262065 non-coding downstream 386386 19358070 ~ 19567558 (-)
G298444 NA non-coding downstream 411183 19377665 ~ 19542761 (-)
G298449 LOC108257688 non-coding downstream 540010 19409824 ~ 19413934 (-)
G298400 NA non-coding downstream 628237 19325497 ~ 19325707 (-)
LOC117599712 NA non-coding upstream 228760 20183058 ~ 20183574 (-)
LOC117599709 NA non-coding upstream 235785 20190083 ~ 20190644 (-)
G298752 NA non-coding upstream 282630 20236928 ~ 20237234 (-)
G298757 LOC108258230 non-coding upstream 289130 20243428 ~ 20246402 (-)
G298758 NA non-coding upstream 292937 20247235 ~ 20247915 (-)
G298543 LOC108261534 other downstream 12945 19884160 ~ 19940999 (-)
G298475 NA other downstream 362507 19590959 ~ 19591437 (-)
LOC113524722 NA other downstream 479968 19472020 ~ 19473976 (-)
LOC113524711 NA other downstream 502340 19429191 ~ 19451604 (-)
LOC113525604 LOC108258223 other downstream 543570 19374773 ~ 19410374 (-)
trnah-gug_23 NA other upstream 410987 20365285 ~ 20365551 (-)
trnah-gug_24 NA other upstream 415910 20370208 ~ 20370279 (-)
trnae-uuc_13 NA other upstream 424007 20378305 ~ 20378376 (-)
trnah-gug_25 NA other upstream 424536 20378834 ~ 20378905 (-)
LOC117599698 NA other upstream 485322 20439620 ~ 20442292 (-)

Expression


Co-expression Network