LOC117599697 (LOC108261534)


Basic Information

Item Value
gene id LOC117599697
gene name LOC108261534
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20105758 ~ 20107245 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313569.1
ATGATCACAGTCCTTGTTGCTCTTTGTCTCTTAACATCAGTGAAACCCACTGACATCAAGGAGTTTCAAGTTCAAAAAGTAAAGCGTGGAgaaaatgttactataaaatgTGACGACTTGTCCAgtgataaaaatgatttaatttggTTCAAACAGAGTTTTGGAAAGGTTCCTCAGTCGGTAGGGAGAGGAGGGGTGAATTCATTCAGACCCGGTGCAGGATTTAATGATGGACGTTTCAGtattagtgtaaataaaaatctgcctAATCTCaacattaaagaaatcaaagaagaGGATACAGGAACATATTTCTGTGCAGAATGGCTGGGATCTTCACTATACTTTAGATTTGGACCCCTTTTGGTTGTTGAAGCTGAGGAGGTGAAACAGCATCCTCCAACTGTAACAGTGATGGAGAACAGAGAGTCGCTCACACTCCAGTGTTCAGTTCATGCGTTTACTTCAAGCTGTGAAGAACAGAGTGTGTACTGGTTCAGACACGGCTCAGGAGAATCTCATCCAggaatcatttacactcatggaGACGGCAGTGATGAGTGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTACACTCTCCCCAAGAGGAAGCTCACAACCTCTGATAATGGAGCGTTCTACTGTGCTGTGGATGCGTGTGGACAAATCCTCTTTACTAATGGAACTGAAGTTAAAGTAGAAGGTTACAGTTGTACTGATCAGACACGTGTGCTGCTCTTGCTCTCAGTTTTTAGAGTTGGAGTTCTTGCCATCATGCTCATTATCTTTACAATAGTcctcatcattttaaaattaagatcAGATTAAATATTCAAAGACAACTGGAAtaaatcctgagctcaggagaAAACAATGTGTTAGTTTTAATTAGTGTTGTAATGCTCGAGACCTGTCTCAGTCTTGTCATAAACTTGAATAAGCATAAACTTGTTGGTGAAATTCTATATGGTCTTTTCTCAGTCTCGGCCTACAAAGACTCAAAATACTTCTTTTAGACACCACCCGAGACCATATCATCATCTCCATGAGCCAGTATTTTGTAATGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313569.1 True 1084 mRNA 0.40 4 20105758 20107245

Neighbor

gene id symbol gene type direction distance location
LOC117599719 LOC108261534 coding downstream 174505 19924626 ~ 19931253 (-)
LOC117599680 NA coding downstream 228013 19876162 ~ 19877745 (-)
LOC117599694 LOC108261534 coding downstream 240096 19864134 ~ 19865662 (-)
LOC117599714 NA coding downstream 393707 19711647 ~ 19712051 (-)
LOC113523950 NA coding downstream 537317 19566942 ~ 19568441 (-)
LOC113523908 LOC108261534 coding upstream 40626 20147871 ~ 20149473 (-)
nfkbiaa LOC108258222 coding upstream 169722 20276967 ~ 20279845 (-)
gtf2a1 gtf2a1,LOC107721813,LOC107658177 coding upstream 186167 20293412 ~ 20303747 (-)
trnae-uuc_5 NA coding upstream 202044 20309289 ~ 20309360 (-)
trnar-acg_12 NA coding upstream 202275 20309520 ~ 20309592 (-)
G298549 NA non-coding downstream 151460 19953944 ~ 19954298 (-)
LOC117599713 NA non-coding downstream 277834 19826993 ~ 19827924 (-)
G298436 LOC108261089,LOC108262065 non-coding downstream 538200 19358070 ~ 19567558 (-)
G298444 NA non-coding downstream 562997 19377665 ~ 19542761 (-)
G298449 LOC108257688 non-coding downstream 691824 19409824 ~ 19413934 (-)
LOC117599712 NA non-coding upstream 75813 20183058 ~ 20183574 (-)
LOC117599709 NA non-coding upstream 82838 20190083 ~ 20190644 (-)
G298752 NA non-coding upstream 129683 20236928 ~ 20237234 (-)
G298757 LOC108258230 non-coding upstream 136183 20243428 ~ 20246402 (-)
G298758 NA non-coding upstream 139990 20247235 ~ 20247915 (-)
G298543 LOC108261534 other downstream 164759 19884160 ~ 19940999 (-)
G298475 NA other downstream 514321 19590959 ~ 19591437 (-)
LOC113524722 NA other downstream 631782 19472020 ~ 19473976 (-)
LOC113524711 NA other downstream 654154 19429191 ~ 19451604 (-)
LOC113525604 LOC108258223 other downstream 695384 19374773 ~ 19410374 (-)
trnah-gug_23 NA other upstream 258040 20365285 ~ 20365551 (-)
trnah-gug_24 NA other upstream 262963 20370208 ~ 20370279 (-)
trnae-uuc_13 NA other upstream 271060 20378305 ~ 20378376 (-)
trnah-gug_25 NA other upstream 271589 20378834 ~ 20378905 (-)
LOC117599698 NA other upstream 332375 20439620 ~ 20442292 (-)

Expression


Co-expression Network