LOC113523908 (LOC108261534)


Basic Information

Item Value
gene id LOC113523908
gene name LOC108261534
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20147871 ~ 20149473 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026909974.2
ACAGGAACGATGATCACGGTCCTTGTCGCTCTTTGTCTCTTAACATCAGtgaaaCCTTCTAACATCAAGGAGCTTCAAGTTCAAAAAGTAAAGCGTGGAGAAACTGGTACTATAAAATGTGACTTGTCCAgtgataaaaatgatttaatttggTTCAAACAGAGTTTTGGAAAGGCTCCTCAGTGGGTAGTGAGACAAGAGAGGAACTCAGTCAGAACTGGTGTAGGATTTTCTGATATACACTTCGGTGTAGATAAACTGTTTCATCTCaacattaaagaaatcaaagaagaGGATACAGGAACATATTTCTGTGCACAAGTGCTGGAATCTTCACTACACATTGGATCTGGAACCCTTTTGGTTGTTGAAGCTGAGGAGATGAAACAGCATCCTCCGACTGTAACGGTGATGGAGAACGGAGAGTTGCTCACACTCCAGTGTTCAGTACAAGCATTTAATTCAAGCTGTGAAGAACAGAGTGTGTACTGGTTCAGAAACGGCTCAGGAGAATCTCATCCAggaatcatttacactcatggaGACGGCAGTGATGAATGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTACACTCTCCCCAAGAGGAAGCTCACAACCTCTGATAATGGAACGTTCTACTGTGCTGTGGCTGCGTGTGGACAAATCCTCTTTACTAATGGAACTGAAGTTAAAGTAATTCAAGTAAAAGAACCATTTCACAACCAttggattgtttttgttttaacaacCTCCAATATAATATCTATTATTGTAATCATGGTTCTGGTTGGAGttttacttaaaaaacaaagaaaaggGGCTTCCAATGACCATCCCAATAACACAAATCAGGCTGATGATGAAGATGTCTTGAACTATGCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGAGTCATGAAGATGTTTATGcacaagttaaaataaaatgaagagaaatgaatgaattcagaTTTAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026909974.2 True 1016 mRNA 0.40 6 20147871 20149473

Neighbor

gene id symbol gene type direction distance location
LOC117599697 LOC108261534 coding downstream 40626 20105758 ~ 20107245 (-)
LOC117599719 LOC108261534 coding downstream 216618 19924626 ~ 19931253 (-)
LOC117599680 NA coding downstream 270126 19876162 ~ 19877745 (-)
LOC117599694 LOC108261534 coding downstream 282209 19864134 ~ 19865662 (-)
LOC117599714 NA coding downstream 435820 19711647 ~ 19712051 (-)
nfkbiaa LOC108258222 coding upstream 127494 20276967 ~ 20279845 (-)
gtf2a1 gtf2a1,LOC107721813,LOC107658177 coding upstream 143939 20293412 ~ 20303747 (-)
trnae-uuc_5 NA coding upstream 159816 20309289 ~ 20309360 (-)
trnar-acg_12 NA coding upstream 160047 20309520 ~ 20309592 (-)
trnah-gug_15 NA coding upstream 161335 20310808 ~ 20310879 (-)
G298549 NA non-coding downstream 193573 19953944 ~ 19954298 (-)
LOC117599713 NA non-coding downstream 319947 19826993 ~ 19827924 (-)
G298436 LOC108261089,LOC108262065 non-coding downstream 580313 19358070 ~ 19567558 (-)
LOC117599712 NA non-coding upstream 33585 20183058 ~ 20183574 (-)
LOC117599709 NA non-coding upstream 40610 20190083 ~ 20190644 (-)
G298752 NA non-coding upstream 87455 20236928 ~ 20237234 (-)
G298757 LOC108258230 non-coding upstream 93955 20243428 ~ 20246402 (-)
G298758 NA non-coding upstream 97762 20247235 ~ 20247915 (-)
G298543 LOC108261534 other downstream 206872 19884160 ~ 19940999 (-)
G298475 NA other downstream 556434 19590959 ~ 19591437 (-)
LOC113524722 NA other downstream 673895 19472020 ~ 19473976 (-)
LOC113524711 NA other downstream 696267 19429191 ~ 19451604 (-)
LOC113525604 LOC108258223 other downstream 737497 19374773 ~ 19410374 (-)
trnah-gug_23 NA other upstream 215812 20365285 ~ 20365551 (-)
trnah-gug_24 NA other upstream 220735 20370208 ~ 20370279 (-)
trnae-uuc_13 NA other upstream 228832 20378305 ~ 20378376 (-)
trnah-gug_25 NA other upstream 229361 20378834 ~ 20378905 (-)
LOC117599698 NA other upstream 290147 20439620 ~ 20442292 (-)

Expression


Co-expression Network