LOC117599694 (LOC108261534)


Basic Information

Item Value
gene id LOC117599694
gene name LOC108261534
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19864134 ~ 19865662 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313552.1
AAACTCCACCATCAGTTCTCATTACAGCCACTGGACCAATCAAATCTGACCACAGCTTCAAAACATCCAATCAGGGGTGACTCTGAACCTGGTTTAATCTTGCACACACAAGTTCATTACCTCACTGTCACGTTGTCTGTACAGGAACGATGATCACAGTCCTTGTCGCTCTTTGTCTCTTAACATCAGtgaaaCCTTCTAACACCAAGAAGCTTCAAGTTCAAAAAGTAAAGCATGgagaaaatgtttctataaaatGTGATGACTTGTTCACTTAcacatatgatttattttggtgcAAACAGAGTTTTGGAAAGGCTCCTCAGTCGGTAGGGAGAGGAGGGGAGAACTCATTCACACCCGGTGCAGGATTTAATGATGGACGCTTCAGTactagtgtaaataaaaatctgcttaatctcaacattaaagaaatcaaagaacaGGATACAGGAACATATTTCTGTGCACAATTGCTGGGAACTTCACTATACTTTGGATCTGGAACCCTTTTGGTTGTTGAAGttttatttttactaattgaTGTTAAAGCTGAGGAGAAGAAACAGCATCCTCCGACTGTAAAGGTGATGGATAACGGAGAGTCGCTCACACTCCAGTGTTCAGTACAAGCTTTTAATTCAAGCTGTGAAGAACAGAGTATGTACTGGTTCAGACACGGCTCAGGAGAATCTCATCCAggaatcatttacactcatggaGATGGCAGGGATGAGTGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTTCACTCTCCCCAAGAGGAAGCTCACAACCTCTGATAATGGAATGTTCTACTGTGCTGTGGCTGCGTGTGGACAAATCCTCTTTAGTAATGGAACTGAAGTTAAAGTAGTAGGTTACAGTTGTACTGATCAGACACGTGTGCTGCTCTTGCTCTCAATTTTTAGAGTTGGAGTTCTTGCCATCATGCTCATTATCTTTACAATAGTcctcatcattttaaaattaagatcAGATTAAATATTCAAAGACAAATGGAATAAATCCTGAGATAAGGAGAAAACAATGTGTTAGCTTTAATTAGTGTTGTGATGCTCGAGACCTGTCTCAGTCTTGTCATAAACTCGAATAAACTTGAATAAGCATAAA
>XM_034313553.1
CATCAGTTCTCATTACAGCCACTGGACCAATCAAATCTGACCACAGCTTCAAAACATCCAATCAGGGGTGACTCTGAACCTGGTTTAATCTTGCACACACAAGTTCATTACCTCACTGTCACGTTGTCTGTACAGGAACGATGATCACAGTCCTTGTCGCTCTTTGTCTCTTAACATCAGtgaaaCCTTCTAACACCAAGAAGCTTCAAGTTCAAAAAGTAAAGCATGgagaaaatgtttctataaaatGTGATGACTTGTTCACTTAcacatatgatttattttggtgcAAACAGAGTTTTGGAAAGGCTCCTCAGTCGGTAGGGAGAGGAGGGGAGAACTCATTCACACCCGGTGCAGGATTTAATGATGGACGCTTCAGTactagtgtaaataaaaatctgcttaatctcaacattaaagaaatcaaagaacaGGATACAGGAACATATTTCTGTGCACAATTGCTGGGAACTTCACTATACTTTGGATCTGGAACCCTTTTGGTTGTTGAAGCTGAGGAGAAGAAACAGCATCCTCCGACTGTAAAGGTGATGGATAACGGAGAGTCGCTCACACTCCAGTGTTCAGTACAAGCTTTTAATTCAAGCTGTGAAGAACAGAGTATGTACTGGTTCAGACACGGCTCAGGAGAATCTCATCCAggaatcatttacactcatggaGATGGCAGGGATGAGTGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTTCACTCTCCCCAAGAGGAAGCTCACAACCTCTGATAATGGAATGTTCTACTGTGCTGTGGCTGCGTGTGGACAAATCCTCTTTAGTAATGGAACTGAAGTTAAAGTAGTAGGTTACAGTTGTACTGATCAGACACGTGTGCTGCTCTTGCTCTCAATTTTTAGAGTTGGAGTTCTTGCCATCATGCTCATTATCTTTACAATAGTcctcatcattttaaaattaagatcAGATTAAATATTCAAAGACAAATGGAATAAATCCTGAGATAAGGAGAAAACAATGTGTTAGCTTTAATTAGTGTTGTGATGCTCGAGACCTGTCTCAGTCTTGTCATAAACTCGAATAAACTTGAATAAGCATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313552.1 True 1148 mRNA 0.40 4 19864134 19865662
XM_034313553.1 False 1112 mRNA 0.41 4 19864134 19865653

Neighbor

gene id symbol gene type direction distance location
LOC117599714 NA coding downstream 152083 19711647 ~ 19712051 (-)
LOC113523950 NA coding downstream 295693 19566942 ~ 19568441 (-)
LOC113523951 NA coding downstream 321388 19541505 ~ 19542746 (-)
LOC113523941 NA coding downstream 343854 19483889 ~ 19520280 (-)
LOC117599702 NA coding downstream 418798 19411881 ~ 19445336 (-)
LOC117599680 NA coding upstream 10500 19876162 ~ 19877745 (-)
LOC117599719 LOC108261534 coding upstream 58964 19924626 ~ 19931253 (-)
LOC117599697 LOC108261534 coding upstream 240096 20105758 ~ 20107245 (-)
LOC113523908 LOC108261534 coding upstream 282209 20147871 ~ 20149473 (-)
nfkbiaa LOC108258222 coding upstream 411305 20276967 ~ 20279845 (-)
LOC117599713 NA non-coding downstream 36210 19826993 ~ 19827924 (-)
G298436 LOC108261089,LOC108262065 non-coding downstream 296576 19358070 ~ 19567558 (-)
G298444 NA non-coding downstream 321373 19377665 ~ 19542761 (-)
G298449 LOC108257688 non-coding downstream 450200 19409824 ~ 19413934 (-)
G298400 NA non-coding downstream 538427 19325497 ~ 19325707 (-)
G298549 NA non-coding upstream 88282 19953944 ~ 19954298 (-)
LOC117599712 NA non-coding upstream 317396 20183058 ~ 20183574 (-)
LOC117599709 NA non-coding upstream 324421 20190083 ~ 20190644 (-)
G298752 NA non-coding upstream 371266 20236928 ~ 20237234 (-)
G298757 LOC108258230 non-coding upstream 377766 20243428 ~ 20246402 (-)
G298475 NA other downstream 272697 19590959 ~ 19591437 (-)
LOC113524722 NA other downstream 390158 19472020 ~ 19473976 (-)
LOC113524711 NA other downstream 412530 19429191 ~ 19451604 (-)
LOC113525604 LOC108258223 other downstream 453760 19374773 ~ 19410374 (-)
ubr7 LOC108257828,LOC108411326 other downstream 780623 19070460 ~ 19083511 (-)
G298543 LOC108261534 other upstream 18498 19884160 ~ 19940999 (-)
trnah-gug_23 NA other upstream 499623 20365285 ~ 20365551 (-)
trnah-gug_24 NA other upstream 504546 20370208 ~ 20370279 (-)
trnae-uuc_13 NA other upstream 512643 20378305 ~ 20378376 (-)
trnah-gug_25 NA other upstream 513172 20378834 ~ 20378905 (-)

Expression


Co-expression Network