nfkbiaa (LOC108258222)


Basic Information

Item Value
gene id nfkbiaa
gene name LOC108258222
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20276967 ~ 20279845 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911127.2
CACTTCCCTCAAGCCTgctcattacacactcacacacactcgcacacacacgctcacagagagagagagagagagccagagagagccagagcatccacacacacaaagaaagcaGTCATGGATATTCACACAGCCCCTACGAGGAATAACCGACTGGACTATTTGGATGAAATGGATCCGAAAAACGCGAAACACACCGATGATCGCTTGGACAGCGGCATGGACTCGCTAAAGGACGAAGAATACCAGCAACTTGTGCAAGAAATGGCGGATCTGGAGCTGCCCAGGAGCGCACAGGACACAATGCACACTTCCCAAGACTGGAAGCATCACGTCACCGAGGATGGAGACACGTACCTGCATCTCGCCATCATACACGAGGCTGAAAATGAAGCAGTTCAGATCATCAAGGACTGCGTCAACGACTCCTTCCTCAACAGACAGAACCACCAAAGACAGACTGCGCTCCACTTGGCTGTCATCATGGAGCAGCCACATATCGTGGAGAAGCTGCTGAAGGCCGGCTGCGACCCACGTGTGGTAGATCAGAACGGAAACACAGCGCTGCACATCGCCTGCAGGAGAGGATCACTGTCCTGTTTCGCCGTGCTGACGCAAATTAACACACATCACCTACGCAGCATCCTGTCTGTCCCAAACTACAGTGGACACACGTGTCTGCACATAGCATCCATCTGTGGCTTCCTGTCATTGGTCGAGAACCTCGTGCAACTGGGTGCAGATATAAATGCCAAGgAACAGTGTAGCGGTCGCACGTGCCTCCACCTGGCTGTGGATCTCCAGAATCTGGCCCTCGTGCAGCAGTTAATCGCTCTGGGCGCCGACGTCAACAGCGTGACCTACGGCGGCCACGTGCCATATCACCTGACCTTCGGCCGGCAGAACGGCGAGATCAGGCAGCAGCTGTTCCTGAGGACGGCGTCTGAGCTGCGAGAGTTTCCCGACTCCGAGAGCGAGAGCGAGGACGAGCTCATGTCCGATGATGATTGTATATACGATGACATTCAGTTTGTTGGGAAGTGaagtgaactaaaaaaaaaaaacaagaaaaaaaaacaagaaaaaatggGGCTTCGTGTTCCCATGAAGCAAAGTAGAAGGCAGCTGGTCCTCATAATCACAGCCGTGGATCACatgacgtgacgtgacgtgacggACGGCTCAGACGCCTCGACACACAACAAGGAGATGGAAGAAAGAAACATGAGGCTGAAATAGGTGCTCAGAAACCTGGGGATTATTGGAAATTTCTTCTCATCCTCAAGTGACCCTGAAGTGACTGTACCTGAGATGCAAGtgtaatatattgtaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0009615 response to virus biological_process

KEGG:

id description
K04734 NFKBIA; NF-kappa-B inhibitor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911127.2 True 1347 mRNA 0.51 6 20276967 20279845

Neighbor

gene id symbol gene type direction distance location
LOC113523908 LOC108261534 coding downstream 127494 20147871 ~ 20149473 (-)
LOC117599697 LOC108261534 coding downstream 169722 20105758 ~ 20107245 (-)
LOC117599719 LOC108261534 coding downstream 345714 19924626 ~ 19931253 (-)
LOC117599680 NA coding downstream 399222 19876162 ~ 19877745 (-)
LOC117599694 LOC108261534 coding downstream 411305 19864134 ~ 19865662 (-)
gtf2a1 gtf2a1,LOC107721813,LOC107658177 coding upstream 13567 20293412 ~ 20303747 (-)
trnae-uuc_5 NA coding upstream 29444 20309289 ~ 20309360 (-)
trnar-acg_12 NA coding upstream 29675 20309520 ~ 20309592 (-)
trnah-gug_15 NA coding upstream 30963 20310808 ~ 20310879 (-)
trnar-acg_15 NA coding upstream 54878 20334723 ~ 20334795 (-)
G298758 NA non-coding downstream 29052 20247235 ~ 20247915 (-)
G298757 LOC108258230 non-coding downstream 30565 20243428 ~ 20246402 (-)
G298752 NA non-coding downstream 39733 20236928 ~ 20237234 (-)
LOC117599709 NA non-coding downstream 86323 20190083 ~ 20190644 (-)
LOC117599712 NA non-coding downstream 93393 20183058 ~ 20183574 (-)
G298794 NA non-coding upstream 109239 20389084 ~ 20390717 (-)
G298801 NA non-coding upstream 149669 20429514 ~ 20430208 (-)
G298823 NA non-coding upstream 212164 20492009 ~ 20501140 (-)
LOC117599711 NA non-coding upstream 365544 20645389 ~ 20646391 (-)
G298878 NA non-coding upstream 396198 20676043 ~ 20677510 (-)
G298543 LOC108261534 other downstream 335968 19884160 ~ 19940999 (-)
G298475 NA other downstream 685530 19590959 ~ 19591437 (-)
LOC113524722 NA other downstream 802991 19472020 ~ 19473976 (-)
LOC113524711 NA other downstream 825363 19429191 ~ 19451604 (-)
LOC113525604 LOC108258223 other downstream 866593 19374773 ~ 19410374 (-)
trnah-gug_23 NA other upstream 85440 20365285 ~ 20365551 (-)
trnah-gug_24 NA other upstream 90363 20370208 ~ 20370279 (-)
trnae-uuc_13 NA other upstream 98460 20378305 ~ 20378376 (-)
trnah-gug_25 NA other upstream 98989 20378834 ~ 20378905 (-)
LOC117599698 NA other upstream 159775 20439620 ~ 20442292 (-)

Expression


Co-expression Network