LOC113523951


Basic Information

Item Value
gene id LOC113523951
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19541505 ~ 19542746 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910049.2
ATGATCACACTCTTTGTCGCTCTTTACTCTCTGCTTTGTCTCTGCACAGCTGtaaaaacttCTGACATCAAGGAGCTTCACGTGAAAACATTAAAGCGTGGAGAAAATGTAACTATGGAGTGTGACATTAGCAGGGTCAGAAACAAAGATAAGTTAGTCTGGTGCAGACAGAGTTTTGGAAAAGTGCCTCAGTTTTTAGCAAGACGTTACGgtcaaaataattacaaatttgCTGAGGGATTTAACTATAGCCGCTTCAGTATTACTGTAAATGACCATAAGTTTGATCTCAACATTATCAAAACAATAGAAGATGATGGAGGAGAATATTTCTGTATAGAAGTTGATGGAAGTTTACTAAAGTTCACATATGGAACACATCTGCAATTTGAAGgtgAAGAGATGAAACTCTGTCCTACACCTGGAATGGTTAACAAGAACACAGATTCTGTTACACTCCAGGGTTCAGACAGCAGTGATGAAAAAGGTTACAGTTGGACTGATCAGATGCATGTGCTGTTCTGGCTCTCCATTGTTAGAGTTCTTGCCTTCATGATTATTGTCATTCCAATAATCCTCCTTGTTTTCAAATTAAGTTCAAATTagaaattcaaaaacaaatggAAGAAATGCTGATTTAAGAATCTAACAATGTGTTAGATTTAACTAGAGCTAATGGCTTATACTGGCTGTATACTGGAATGATTTTGGTCTAACTGTAATGTGGAAGTATTTACCAGCTGTACTTACAGCTGCATTTaagggctcctgagtggcgcaGTAGAAAATTGTTCGCCCTATCGTCTCGAGCTCTAAT

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910049.2 True 817 mRNA 0.38 4 19541505 19542746

Neighbor

gene id symbol gene type direction distance location
LOC113523941 NA coding downstream 21225 19483889 ~ 19520280 (-)
LOC117599702 NA coding downstream 96169 19411881 ~ 19445336 (-)
LOC113524709 nitr1,LOC108261534 coding downstream 181655 19357778 ~ 19359850 (-)
LOC113547659 NA coding downstream 220015 19314727 ~ 19321490 (-)
LOC113547703 NA coding downstream 243477 19277991 ~ 19298028 (-)
LOC113523950 NA coding upstream 24196 19566942 ~ 19568441 (-)
LOC117599714 NA coding upstream 168901 19711647 ~ 19712051 (-)
LOC117599694 LOC108261534 coding upstream 321388 19864134 ~ 19865662 (-)
LOC117599680 NA coding upstream 333416 19876162 ~ 19877745 (-)
LOC117599719 LOC108261534 coding upstream 381880 19924626 ~ 19931253 (-)
G298449 LOC108257688 non-coding downstream 127571 19409824 ~ 19413934 (-)
G298400 NA non-coding downstream 215798 19325497 ~ 19325707 (-)
G298358 NA non-coding downstream 314820 19226399 ~ 19226685 (-)
G298350 NA non-coding downstream 321824 19219117 ~ 19219681 (-)
G298349 NA non-coding downstream 324266 19216638 ~ 19217239 (-)
LOC117599713 NA non-coding upstream 284247 19826993 ~ 19827924 (-)
G298549 NA non-coding upstream 411198 19953944 ~ 19954298 (-)
LOC117599712 NA non-coding upstream 640312 20183058 ~ 20183574 (-)
LOC117599709 NA non-coding upstream 647337 20190083 ~ 20190644 (-)
G298752 NA non-coding upstream 694182 20236928 ~ 20237234 (-)
LOC113524722 NA other downstream 67529 19472020 ~ 19473976 (-)
LOC113524711 NA other downstream 89901 19429191 ~ 19451604 (-)
LOC113525604 LOC108258223 other downstream 131131 19374773 ~ 19410374 (-)
ubr7 LOC108257828,LOC108411326 other downstream 457994 19070460 ~ 19083511 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other downstream 1435512 18072545 ~ 18105993 (-)
G298475 NA other upstream 48213 19590959 ~ 19591437 (-)
G298543 LOC108261534 other upstream 341414 19884160 ~ 19940999 (-)
trnah-gug_23 NA other upstream 822539 20365285 ~ 20365551 (-)
trnah-gug_24 NA other upstream 827462 20370208 ~ 20370279 (-)
trnae-uuc_13 NA other upstream 835559 20378305 ~ 20378376 (-)

Expression


Co-expression Network