ubr7 (LOC108257828,LOC108411326)


Basic Information

Item Value
gene id ubr7
gene name LOC108257828,LOC108411326
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19070460 ~ 19083511 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU353207
tggcggcggcggcggcggagggagagggagaggaggtaACCGTGTCTCTGGTGGATGTgctggaggaggatgaggagctGGAGCAGGAAGCCTCGGCTGTGCTCGGAGGCAGCGACTCGGAGAAGTGCTCATATCCAGAGGGAGGAGAACCAGCAGGAATCTGTCTTGCCTGTTCATACAAGTGTCATGAAGGTCACGAACTGTTCGAGCTCTACACCAAGAGGAATTTCCGGTGTGACTGTGGGAATGAGAAGTTCGGAGAGATGGAGTGCAGGTTATTCCCAgagaaagagaagacCAACTGCGGGAATAAATACAGTCACAATTTCTTCGGGCTGTACTGCACGTGTGAGAGGCCGTACCCCGACCCAGAGGACGAGGTTGCCGATGAGATGAtccagtgtgtggtgtgtgaggacTGGCTG
>XM_034313411.1
caggctgtgtgtgttagtgttagtgttagcagcagcagcagcagcatggcggcggcggcggcggagggagagggagaggaggtaACCGTGTCTCTGGTGGATGTgctggaggaggatgaggagctGGAGCAGGAAGCCTCGGCTGTGCTCGGAGGCAGCGACTCGGAGAAGTGCTCATATCCAGAGGGGTATGTGAAGCGTCAGGCTCTGTACGCGTGTAACACCTGCACACCAAAGGGAGGAGAACCAGCAGGAATCTGTCTTGCCTGTTCATACAAGTGTCATGAAGGTCACGAACTGTTCGAGCTCTACACCAAGAGGAATTTCCGGTGTGACTGTGGGAATGAGAAGTTCGGAGAGATGGAGTGCAGGTTATTCCCAgagaaagagaagacCAACTGCGGGAATAAATACAGTCACAATTTCTTCGGGCTGTACTGCACGTGTGAGAGGCCGTACCCCGACCCAGAGGACGAGGTTGCCGATGAGATGAtccagtgtgtggtgtgtgaggacTGGCTGTCTcacttGGGCTGTGTGGTCCCGGAGTGTGTGGAACTTCAGGAAATGATCTGTGAGTCCTGCATGAATAAATCTCCGTTCCTCTGGACCTACGCTGCTCACCTGGCCGTGCCTCCTACAGTGAAAGTGTGTAAAGAAGAGGAGGACAGTGTGAGAGTGGAGGTGGAGCATGATGAAGAGGAGAATAAAACAGACGTGAAGAGCTCGCTGAATGAAAAGgtggaggtgtgtgagCAGGTGGAGGTGAACGGGACGGCCGGCTGTAAGAGGAAGCTGCAGGAGCTGGAGGCTGAAGGTTCAGGGTGCAGGTTTGAGGAGATGAAGTCGTCGGGGAAGAGCCGGGTTCGGCAGGGAGCCGTGTTCTGGCCTGCAGCGTGGCGCACTAAACTCTGTTCCTGTCAGCGCTGTaagagtgtgttAGCGGAGGGCGGCGTGTGCTTCCTGTTGGATGAGACCGACACGGTGCTCGCGTATGAGAATAAGGGCAAAACCACAGAGCAGGCGAACGGAGGCGAAGCTCGAGACCCGCTCATGTCTGCACTCAACAACCTGAACCACGTGCAGCAGCTCGAGATCATtcacgAGTATAACGACATGAAGACGGAGCTGAAGGATTACTTACAGAGGTTTGCAGCGGAGGGAAAGGTGGTGACCCCGGAAGACATCCGTCGCTTCTTTGAAGAGCAGCAGAGTCGTAAAAGACGGAGAGCCAACGCCGGTCAGTACTACTGCAGCTGAATCCTCGTTCAACTAAAACCCGAACCTTCGACGTCCACAATTCGTGCTccttttgtaataaatataaatataaatataaatatgcagcCATCAATCGAGAAGCCATGGTGCTGGTTTTGAGATTTAAAACGTTGAGTCTGACGTTGAGGTTGTTCCCAAAGAGCCATTTATACCGAGACGTtcaataaattcattaataaacgCCGTGGATGTGGCGCGGATCAGCACGCGGAGAAATCACGGGACACGATCCACGCCGAAGCCCCGCCCAGGTTAACCTCACGTCACACGATTAGATGCTTTTGATTTGTCTCCTGCTTGGTCATTACCGCATTCAGGATTTGTTATAAACACGTTCTGATTGGGCCGCTTTTGTTTGTGTTAAGCTTTTTTcgcttttttcttcctctctcgcCAGTCCATATAATGAATTGTCGTGACCAAGTAGTGATTTTATTATCGCTGTTTTATCTGTACTTTAGACCTTGCATTACTTTGTAAATGTATCTTTGAGAAATTAAACGTATTAATACTTTGA

Function

NR:

description
putative E3 ubiquitin-protein ligase UBR7

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11979 UBR7; E3 ubiquitin-protein ligase UBR7

RNA

RNA id representative length rna type GC content exon number start site end site
TU353207 False 425 TUCP 0.56 5 19078004 19083465
XM_034313411.1 True 1798 mRNA 0.51 11 19070460 19083511

Neighbor

gene id symbol gene type direction distance location
si:dkey-85n7.8 LOC108257834 coding downstream 56364 19010684 ~ 19014096 (-)
ppp4r4 ppp4r4,LOC107711657 coding downstream 177130 18858177 ~ 18893330 (-)
LOC117599718 NA coding downstream 237525 18831306 ~ 18832935 (-)
kif26aa LOC108257555 coding downstream 247292 18728696 ~ 18823168 (-)
mthfd1a mthfd1 coding downstream 401490 18635283 ~ 18668970 (-)
tmem251 tmem251 coding upstream 6065 19089576 ~ 19093407 (-)
chga chga coding upstream 55575 19139086 ~ 19163575 (-)
si:dkey-177p2.18 LOC108257913,LOC107721335,LOC108411318 coding upstream 87506 19171017 ~ 19183615 (-)
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding upstream 103163 19186674 ~ 19205092 (-)
ahsa1a LOC108257911 coding upstream 123623 19207134 ~ 19213951 (-)
G298286 NA non-coding downstream 3528 19002340 ~ 19066932 (-)
G298243 NA non-coding downstream 240169 18829534 ~ 18830291 (-)
G297969 NA non-coding downstream 508626 18561597 ~ 18561834 (-)
G297966 NA non-coding downstream 520847 18549260 ~ 18549613 (-)
G297960 NA non-coding downstream 537620 18531678 ~ 18532840 (-)
G298309 NA non-coding upstream 4590 19088101 ~ 19088655 (-)
G298349 NA non-coding upstream 133127 19216638 ~ 19217239 (-)
G298350 NA non-coding upstream 135606 19219117 ~ 19219681 (-)
G298358 NA non-coding upstream 142888 19226399 ~ 19226685 (-)
G298400 NA non-coding upstream 241986 19325497 ~ 19325707 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other downstream 964467 18072545 ~ 18105993 (-)
acot20 LOC108257587,LOC108257591 other downstream 1355188 17707286 ~ 17715272 (-)
esr1 esr1 other downstream 1563802 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 1834331 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 2023629 17043166 ~ 17046831 (-)
LOC113525604 LOC108258223 other upstream 291262 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 345680 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 388509 19472020 ~ 19473976 (-)
G298475 NA other upstream 507448 19590959 ~ 19591437 (-)
G298543 LOC108261534 other upstream 800649 19884160 ~ 19940999 (-)

Expression


Co-expression Network