ttc32 (ttc32)


Basic Information

Item Value
gene id ttc32
gene name ttc32
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17043166 ~ 17046831 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU351727
GAAAACGGCGccattgttgttatttattgttgttgtttgttgttgtcagCTGAGATACAGACACATGGAGGAGCAGACAAAGGTGTTGGACAGACAAACTCTCCTGAATGAAGCTAATGATGAGTTTAACCGCAAACATTTAAAACGCGCAGAGGATTTGTACACAGAGTTCATCAACATCTGCATGGCATCTGGAGAATGCGACAGTAATGACCTCGCCATAGCCTACAATAACCGCGGCCAGGTGAAGTACTTCCGGGTTGATTTTTATGAAGCCATGGATGATTACAGCGCAGCAATTAAAGCCAACAGGCAGTTTGAAGTGCCTTATTACAACCGAGGATTAATAAGGTTTCTTCCAAGATGCTGAGAATGATTTTAAGAAAGCTTTGGAAATAAATTCCAACTTTGAAGACGCCAGACTAAGTTTGCATCAGGCAATTCTCGActctgaagaaaaaagaaggagaggCTATTGATGATGGATTTTCACCGCCGTGTTTATGACTGAAAGAACTTAATTCCTAACTGatttttaagtgtgtgttgtgaacGGCTTGGATTTGCTTCAAAGCAGaagttttttcttaaaaaaaattactttttgtaattta
>XM_026923331.2
TACCCCAGAAACACAAACGAAGAAAACGGCGccattgttgttatttattgttgttgtttgttgttgtcagCTGAGATACAGACACATGGAGGAGCAGACAAAGGTGTTGGACAGACAAACTCTCCTGAATGAAGCTAATGATGAGTTTAACCGCAAACATTTAAAACGCGCAGAGGATTTGTACACAGAGTTCATCAACATCTGCATGGCATCTGGAGAATGCGACAGTAATGACCTCGCCATAGCCTACAATAACCGCGGCCAGGTGAAGTACTTCCGGGTTGATTTTTATGAAGCCATGGATGATTACAGCGCAGCAATTAAAGCCAACAGGCAGTTTGAAGTGCCTTATTACAACCGAGGATTAATAAGGTATAGACTGGGTTTCTTCCAAGATGCTGAGAATGATTTTAAGAAAGCTTTGGAAATAAATTCCAACTTTGAAGACGCCAGACTAAGTTTGCATCAGGCAATTCTCGActctgaagaaaaaagaaggagaggCTATTGATGATGGATTTTCACCGCCGTGTTTATGACTGAAAGAACTTAATTCCTAACTGatttttaagtgtgtgttgtgaacGGCTTGGATTTGCTTCAAAGCAGaagttttttcttaaaaaaaattactttttgtaatttaatctcgttgtaaatttgtaaattatttagggttactaaataattattaatgcaatgTCTGTTTTGAACAGGTCTCATTTCCTCAAATAAAATGTCTGTAGTgaaatttattgtaaattattataaaataatctaCTTTGTCATCTCA

Function

symbol description
ttc32 Orthologous to human TTC32 (tetratricopeptide repeat domain 32).

NR:

description
tetratricopeptide repeat protein 32

GO: NA

KEGG:

id description
K24946 TTC32; tetratricopeptide repeat protein 32

RNA

RNA id representative length rna type GC content exon number start site end site
TU351727 False 614 TUCP 0.39 3 17043313 17046810
XM_026923331.2 True 793 mRNA 0.37 3 17043166 17046831

Neighbor

gene id symbol gene type direction distance location
zpax1 LOC108257994 coding downstream 1719 17030354 ~ 17041447 (-)
mixl1 NA coding downstream 16993 17023135 ~ 17026173 (-)
LOC113531763 LOC102294303 coding downstream 51439 16990552 ~ 16991727 (-)
efr3bb efr3b,efr3bb,LOC108424480,LOC107678842,LOC107549699 coding downstream 81549 16913705 ~ 16961617 (-)
si:ch211-203k16.3 LOC108257753,LOC108424433,LOC107603096,LOC107549701,LOC107697150 coding downstream 133768 16881837 ~ 16909398 (-)
laptm4a laptm4a,LOC107743288,LOC107678852 coding upstream 22594 17069425 ~ 17080809 (-)
mideasa LOC108258070 coding upstream 45739 17092570 ~ 17113651 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763 coding upstream 102957 17149788 ~ 17152955 (-)
capn3b LOC108257553,LOC108424491 coding upstream 121356 17168187 ~ 17193647 (-)
si:dkey-12h9.6 LOC108258171,LOC103045157,LOC108424494,LOC105908978 coding upstream 169382 17216213 ~ 17232098 (-)
G297011 NA non-coding downstream 161345 16879396 ~ 16881821 (-)
G296994 NA non-coding downstream 195952 16846121 ~ 16847214 (-)
G296993 NA non-coding downstream 197158 16845115 ~ 16846008 (-)
G296965 NA non-coding downstream 235844 16741241 ~ 16807322 (-)
G296835 NA non-coding downstream 428395 16614540 ~ 16614771 (-)
G297044 NA non-coding upstream 1943 17048774 ~ 17048993 (-)
G297045 NA non-coding upstream 3564 17050395 ~ 17050639 (-)
G297049 matn3a,LOC108257995,LOC108424436 non-coding upstream 7533 17054364 ~ 17055003 (-)
G297050 NA non-coding upstream 17335 17064166 ~ 17064385 (-)
G297052 NA non-coding upstream 18851 17065682 ~ 17066428 (-)
G296802 igf2r other downstream 485239 16555103 ~ 16557927 (-)
pln NA other downstream 900550 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 1560805 15463081 ~ 15482361 (-)
pkib pkib other downstream 1738869 15273854 ~ 15304297 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 2271131 14726401 ~ 14772035 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 187146 17233977 ~ 17236129 (-)
esr1 esr1 other upstream 438753 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 660455 17707286 ~ 17715272 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 1025714 18072545 ~ 18105993 (-)
ubr7 LOC108257828,LOC108411326 other upstream 2023629 19070460 ~ 19083511 (-)

Expression


Co-expression Network