pex7 (pex7,LOC107727680,LOC107676274)


Basic Information

Item Value
gene id pex7
gene name pex7,LOC107727680,LOC107676274
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14726401 ~ 14772035 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350460
GTATATtatctcttcttcttttggttaaTATTCATCTTTGCACAATATCTGGCTGAAATAGTTGTGTGTGGgggggattgtgtgtgtgtgtgggattgtgttcagtgttcttcattAGCTTTGTAAGAACATTCAGCTTttcataatgtactgtatattatgtaaggaatatcACACTTTAGGCATGCCATTACAGGAAAATTATCAacgacaaggtggtgtgatgtggcctgactcgaagcagagttacagttaccatatcacagttgattattttcctacaacagcatgtgttttattcttcttatacctcagcaatttgccagcaattacaaatttttaattattagtgaTTGAcaaatactttttatccatttatagttgcatttaatgttgttgaacgttcatgaaacaaattagttcctgttatcacctacgttacagcagctt
>XM_026923339.2
TTTGGCCTCTCTTCCTAAGAACCAAAACAAGGAAGGAGTAGGAAACATGTGAAGCAGCGATGTTAGCACTGGAtagtttatactttatacactgactgattttatttacttaaaatacacaaattacgTGAAGTAATATTTTAACGAGTCGTATAATTTCGTAATTCTTGTTGTATTAATAGGAGTGTGGATATTTTGGGCTAAGAATggttgttagctagctagtaattAGCTCATTTGAAATGCTGTAGCAGTAATAGCATGAGTTAACGGTGAGGCAGTTTCTCTGGATGTTTTCGGAGTAATGTCAGTGtagatgaaggagagagaggatgaagTGGTTCCGGTGTCCAGCTCGACACGGTTATGCGGTGGAAATGTCCCCGTTTCTCCCCAACACACTGGCCTGCGCTACAGCTCAGTATTACGGCATAGCAGGATGTGGAACGCTGCTGGTGCTGGAGCAGAGGGAAGCGGATATTGTGCTCATGAGAAGCTTTGACTGGAACGATGGGCTCTTTGATGTGACGTGGAGTGAGAACAACGAGCATGTGCTGGTGACCGGAGCTGGTGATGGCTCACTGCAGATATGGGACACAGCCAACCCACAAGGGCCTATCCGAGTACTGAAGGAGCACAGTCAAGAGGTGTATGCAGTGGATTGGAGCCAGACACGGACCGAGAACCTGGTGGTGTCAGGATCCTGGGATCACACCGCCAAAGTGTGGGATCCAGAACACCCTCAGTCCGTGTGCACACTTCAGGGTCACGAGGGAGTCGTGTACAGCACCATCTGGTCTCCACACATCCCAGCCTGCTTCGCCTCAACCTCAGGAGATGGCACGCTGAGAGTTTGGGACGTGAAAGCAGGCTCGTGTCGACTGGCCATTCCGGCACACAAAGCCGAGATCCTTAGCTGTGATTGGTGCAAATATGACCAGaATGTGTTGGCGACGGGAGCCGTTgactgcagcgtgtgtgtgtgggatctGCGAAACGTCCGCCAGCCTGTAGCTCAAATGCTGGGCCACTCCTATGCCATCCGGAGAGTAAAGttctCCCCATTCTGCAAGACCGTGCTGGCGTCCTGCTCCTATGACTTCACAGTCAGGGTCTGGGATTTCTCCAGGAGTCCGCCGCTGCTCGACACCATGGAGCACCACTCGGAGTTCGTGTGCGGCCTGGACTTCAACCTGCACATCCCCAACCAGgtgGTGGACTGTTCCTGGGATGAGACGGTAAAAATCTACACCCCTCCATGTCTGGCTGCTATGCAACCCAGCTCGGCGTAAAGAGAAGATAACGTCCTGACTGCAGCGGGGCTTTGAGTCTACAGGATTGCCACTGCACTCTTCCTAAAGGAGGAAAATGCCCCATGTGACAAATGCAGTGTGAAACAGACTCAGGAAAGCTGCTGATGAGTTTTAGAGTGCAGAGGGTTTAGCAAAACAAGTCTTCTTATCAGCGTGAACTTGAAACCTGGTCTTGTAGTCAGTGTGGAAATCTGTGTGTAGCGTAAAGTTCCTCCAGAAAGACCCTTCACTGGTCCACATGCAGGTTCAGAGTCCTTGATGAAGGTTGATGCTAAGCTGGGTGAAATCATGTTGGCTCCTTTTAGGTGATACACATATGATATGTAGACTCCTAATGACTGATCCATGAAATCAGTGTCTTATAGGGAAAGTGACTAATCCAAATAACAATTAAAGATTTctaatttctaaataaattgGTAGATATTCATCATATTtgtgtggcggcctgggaaaacctttcacacagtaaaattttgatattttctgcTACATATTCTTCTAAAACCTACAGACTTActtgaactgaaatgtgtttctcttttgcatgtatctcaatcGGAAGTTTTCAAGTCTGGAGCATggcggacattttgacagcagGTGTCTGATTATAAATCgaactgattaggcttatgtctgtttttGCTGTGGCACGTAGCTATACAACAACTTAATCAATGTGTGACATTCACACAAGGTTTTAGACGTCTTCATCAAGGTTTTTATCcacagtttttcttcacagttcaCAAATCAGAGCCATTAAGAGCCACTAACAGGAACCATAGGGTTTTAGTTTAGCACTGCTTTTCACGCAGGGAAAACTGAGCAGCTCAGGCCTACAAATAAAGACTCGGATCTTGGCTTTGATTGTTGATTGTGATCGTAAATGTATGTGTGGCTAGAGCAAGTTTTCCCTTTTATTGATTTTCTGCTACAACACCGCAGGCAGTTGTCCTGTATTAGGAAGTTAAATTGACTCTTGATCCAACAGGATGCTTGCAGAAAGCCTAGGCAAGAgtcaaaggaaaataaaaacatttccacataatTGTGGTGAACTATATTTATACTTTCTTAAAGTTGTGGTATCAGCATATGCacaaaaatgaacttttttttttttttttcatcttttttggttgtttgctagaattcagccacagcaacatctaacaggttttcccagaccggCACACATTTATAAATCAGATGCCTGTACtggctttaaaataaaaatcctgctctttgtgtttatttctaatGGTTGAAAAATCGAGGGTCTTGGATGTgtttaaagctaaaataataataataataataataataataaataaaagtaaatttacTGTGTCTCTCACTGCTTTTGAGGTGTACTTTATCTTCCTACAATCTCCAAAGGACTAAGAGGAAAAGTGCCCTTTCTCTGCCAGTAGGAGTGTGTTGCGCTGAATGCAAATCACCctgtgtaatataataaagatGCGATTCCTCCTCCGTAAGGATTTACAGCCTGTATAAAAGGTGAAGAACAGAGTGCAAATATATAAAGCCTACATGAGTGTATATtatctcttcttcttttggttaaTATTCATCTTTGCACAATATCTGGCTGAAATAGTTGTGTGTGGgggggattgtgtgtgtgtgtgggattgtgttcagtgttcttcattAGCTTTGTAAGAACATTCAGCTTttcataatgtactgtatattatgtaaggaatatcACACTTTAGGCATGCCATTACAGGAAAATTATCAacgacaaggtggtgtgatgtggcctgactcgaagcagagttacagttaccatatcacagttgattattttcctacaacagcatgtgttttattcttcttatacctcagcaatt

Function

symbol description
pex7 Predicted to enable peroxisome matrix targeting signal-2 binding activity. Predicted to be involved in protein import into peroxisome matrix. Predicted to be active in cytosol and peroxisomal matrix. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and rhizomelic chondrodysplasia punctata type 1. Orthologous to human PEX7 (peroxisomal biogenesis factor 7).

NR:

description
peroxisomal biogenesis factor 7

GO: NA

KEGG:

id description
K13341 PEX7, PTS2R; peroxin-7

RNA

RNA id representative length rna type GC content exon number start site end site
TU350460 False 450 lncRNA 0.34 1 14726401 14726850
XM_026923339.2 True 3199 mRNA 0.43 10 14726531 14772035

Neighbor

gene id symbol gene type direction distance location
LOC113532199 slc35d3 coding downstream 1284 14717839 ~ 14725117 (-)
pbk pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197 coding downstream 12498 14708060 ~ 14713903 (-)
ccdc25 ccdc25,LOC107675065 coding downstream 29740 14690164 ~ 14696661 (-)
LOC113532135 NA coding downstream 40316 14682182 ~ 14686085 (-)
clu clu coding downstream 94135 14621857 ~ 14632266 (-)
hey2 hey2,LOC107717129,LOC107727582,LOC106571366 coding upstream 5042 14777077 ~ 14785071 (-)
tpd52l1 tpd52l1 coding upstream 70998 14843033 ~ 14861239 (-)
rnf217 rnf217 coding upstream 97025 14869060 ~ 14894454 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617 coding upstream 133089 14905124 ~ 15101973 (-)
clvs2 clvs2,LOC107675233,LOC107675107 coding upstream 424901 15196936 ~ 15226775 (-)
G295836 NA non-coding downstream 37765 14688358 ~ 14688636 (-)
G295828 NA non-coding downstream 56091 14670101 ~ 14670310 (-)
G295827 NA non-coding downstream 56676 14669508 ~ 14669725 (-)
G295783 NA non-coding downstream 129989 14594416 ~ 14596412 (-)
G295753 NA non-coding downstream 207909 14518274 ~ 14518492 (-)
G295909 NA non-coding upstream 20505 14792540 ~ 14792749 (-)
G296237 NA non-coding upstream 550956 15322991 ~ 15323410 (-)
G296731 NA non-coding upstream 1380299 16152334 ~ 16155973 (-)
G296734 NA non-coding upstream 1385299 16157334 ~ 16165845 (-)
G296733 NA non-coding upstream 1391456 16163491 ~ 16165288 (-)
trnal-cag_15 NA other downstream 130006 14596313 ~ 14596395 (-)
trnal-cag_14 NA other downstream 131770 14594549 ~ 14594631 (-)
trnal-cag_13 NA other downstream 132408 14593911 ~ 14593993 (-)
trnal-cag_12 NA other downstream 133926 14592135 ~ 14592475 (-)
trnas-gcu_15 NA other downstream 339705 14386615 ~ 14386696 (-)
pkib pkib other upstream 501819 15273854 ~ 15304297 (-)
G296263 cx32,LOC108257940,LOC108424424 other upstream 691046 15463081 ~ 15482361 (-)
pln NA other upstream 1362099 16134134 ~ 16142616 (-)
G296802 igf2r other upstream 1783068 16555103 ~ 16557927 (-)
ttc32 ttc32 other upstream 2271131 17043166 ~ 17046831 (-)

Expression


Co-expression Network