rnf217 (rnf217)


Basic Information

Item Value
gene id rnf217
gene name rnf217
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14869060 ~ 14894454 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923308.2
TTGCGCTCTTTATACAGGATTTACGGTAAATGTCACCTAGCACTATAACAGGCGAACATGACGCTTGACAAACTGATCTACTCTCTTCAGGTTTCTTTAACATGACTTATCATGGTGCATTTTGAATTCCAGAGGGACAATAAGGTGTTTTTTGTTCACTTTAAAGAAACAAGTCGGTTCACACAGGCTAACAGGAGCTCGCATGAAGTGAACAGGGATTTGTTTTTGTATCTTAAGCGGAGCCGGAAGTAGGAGCTTGATGGCAGTTGCGCTCTTGTTTAAGAGTTTGAAACAAGGCAAGTTCACAAATGTGGACTTGTCTCTCTGTCGGGAATGGGAGATGAGCTCGGCTGCGTGAATGTGGCCTCGAAAAACATGCTTAGTTTTAGCGGTTCCGACGGAGAGACCGTGGGGAATGTGGCGGACGTGGCTGTGGAAGTTGGGACGCAGAGCTCTGATTTTGGAGAGGAAGACGCAGAGAGCACGGAGCCCAGTGTGGCTGATGTGCTGGACTTCCAGCACTGCAAACCCGAAAGCAGGGATAAAGACACGTGCAGAACAACGTCACCGGTAGAAATCCTACGGAGAAATTTCGGAATCGCGAAAACATCTGGAACTGGAGGGGACAGTAATGTGGAAACCCCCAGAGTGCTGGACAAAGTCGACTCCATGTTGGAGAACTTGGACCACAGAAGGTTGGCTGGGAGCAGAAGGACACAGTGCAGCTCGTCTCTCAACGAGGAAGAGGAAAGTCACTCCGACTTCCCAGATTTCCTAACATCCTTGGAATTAGAAGATCCTGAACTTCCTGTTTCTGAAGAAAACAGTGATTCCAGAAGTGCAGATGAACATCACCAATCCAAAGAGCACGTCTACtgcactgtatactgtatagcCAATGATAACTATAGGAAGCCTTCAGATACCACCCTGTCATCAGAGCGTGGAAGTCCATCGCCTTCAGATCTGTCGGTTTTACCTCCTACGGACTCATCAAATTCAGATCCAGATATCGAACTCGATCATTACCCAGAGCCGTACACGTTGAGCGACCTTGCAGAGCCTCCAGTGTTGAGCAATGTTCTCTACGTGAATAACATAATATTACAGTGTCGCGTGTGTCTTGTTATCAGATCCATCAGCTCCCTGCACTGTTGCAAAAAGCCGGTGTGTGAAGAGTGTATGAAAACATACATCAGTTCTCAGGTTGTCTCAGGCCTTGCAGAGATCGTGTGTCCAATCCCAGAGTGCAGCGGATACCTGGCGGAGAGCGTGGTGCTGGCCCACCTGGCCTCTGAGAATGTGGCTAAGTATAAGTACTTCCTGGAACTTGGCAGACTGGACTCGGGAACTAAGACCTGTCCAAAGTGTAGCTTGTTCACTTCGCTGAAGGGACGCGGCCAGCCGGTGCAAAGCAAAGACGAGCCCAAGTACAAGATCCAGTGCAGTAAGTGCGAGTTGGTGTGGTGTTTTAGATGCCATGCACCATGGCACGAGGGTTTGAAGTGCCGCGAGTACAGGAAGGGAGACAAGCTGCTGCGTAACTGGGCCAGCGTTATCGAGCAAGGCCAGAGGAACGCCCAGAAATGCCCACAATGCAAGGTCCACATCCAGAGGGTGGACGGCTGTGATCACATGACCTGCACGCAGTGCAACACCAACTTCTGTTACCGCTGCGGTGAAAAATATCGGCAGCTGCGCTTTTTCGGAGATCACACCTCCAACCTGAGCGTGTTCGGCTGCAAGTACCGCTACCTGCCTGAGAAACCGCACCTGCGCCGCCTCATCCGTGGATCCGTGTGCGCGAGTAAAGTGCTGGTGGCGCCGGTGCTCATTGTCCTTGTGGTGGTGATCGGAGCCTTGGCTCTGGTTATAGGTCTGGTCGCATTCCCCATTTACTACATctgtaagaagaataaacatCCCAACGGCATTGGACGCTGGCTGTGCTAAGACTGcccatcttcacacacacacacacacacacacacacacacacacacacacacacacttacacacactacacgGTGATATGGATGATGGTCGAGtgagctctgttttttttcccctttaccTCCAACACACAGATCACTACTCCATCAAGGATTTTCACAACACAGCAACGTATGTAAGAATTCATCCAGTTTACAAACCTTTACTATAGATGGAACTGATGCTTCATGTGAGAGTCGTGCATTTTAGCTTCATTCTTTTTAGCGCATAGAATGCTTTTATCTGGATGTTTCGAGTGATTATTCAGGGATTTGATGGGGTCAATAGGAATTcagttctctcacacacatacacacacacatatcctgaCCCAGCATGCTGCACTGCACTCTACTGGAATTTTGCACCATcaacaaaaatgtgtgtgttcgGATGCTGATCTGACTTACTGCCTAGGAGATTATCACCATGCCATTTGTGTCAGTCCTGAGGCCTTGTTTACACCTCACACTAACATGCATTGTGTATCTGGATATCCATATTCAAACTAGCCCCTGCTATTACACCTGATATTTATATGCATTCAAATAGTTGTGGTGTGAGCTGATCTAATTTTTCTTACACGATATAAAGATAAGAGAGATAGACGGAGTTAGGGCCGAGGTTATACTTGCTTTTCATTCGCCAGCAGGGGTGCCAACATTTACGGTTTAGCTGTTGCACCTTTGTATAGCAATGCAGTGGATACCTGAAAGgtacacttttctgctttttcagctaaagtAACCGTCAGGCCAAACACGAATAAAATGTGCGTAAAAGgcagttcactgaaggggaaaggacgcaggaTGTGAAAAACTCCCATTTGAGCTGACTTTATCAAGGTATCCTGTAAATTCGCAAAACTGTAATTTTGTGAAATCAGAACAAGAGGACGGGGCTGTAGGCTCTGGGCAGTAAAAGCGTGTTgctgtttatcatttatggtGTTAGCATAGAGCCTTCCCGTCCACTGACACACgctaaggttttatttttttatttatttatttttttgtaaaattctgTCTTTACCTGCCGCGATtttctttttagcattttaacatGACATGCTTGTGATGCAGTTCCAACATAAACAGCTGCCACATCATTTGAAGCAGCACAAAAGCATGTTTCTCATCACATTAGGTAGATAAGGAACCagtttctccaaaaaaaaaaaaaacagctgttgGC

Function

symbol description
rnf217 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human RNF217 (ring finger protein 217).

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase RNF217

GO: NA

KEGG:

id description
K11977 RNF217, IBRDC1; E3 ubiquitin-protein ligase RNF217

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923308.2 True 3194 mRNA 0.47 6 14869060 14894454

Neighbor

gene id symbol gene type direction distance location
tpd52l1 tpd52l1 coding downstream 7821 14843033 ~ 14861239 (-)
hey2 hey2,LOC107717129,LOC107727582,LOC106571366 coding downstream 83989 14777077 ~ 14785071 (-)
LOC113532199 slc35d3 coding downstream 143943 14717839 ~ 14725117 (-)
pbk pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197 coding downstream 155157 14708060 ~ 14713903 (-)
ccdc25 ccdc25,LOC107675065 coding downstream 172399 14690164 ~ 14696661 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617 coding upstream 10670 14905124 ~ 15101973 (-)
clvs2 clvs2,LOC107675233,LOC107675107 coding upstream 302482 15196936 ~ 15226775 (-)
smpdl3a smpdl3a coding upstream 339483 15233937 ~ 15244412 (-)
LOC113531927 NA coding upstream 354094 15248548 ~ 15250762 (-)
LOC117599773 NA coding upstream 363919 15258373 ~ 15259420 (-)
G295909 NA non-coding downstream 76311 14792540 ~ 14792749 (-)
G295836 NA non-coding downstream 180424 14688358 ~ 14688636 (-)
G295828 NA non-coding downstream 198750 14670101 ~ 14670310 (-)
G295827 NA non-coding downstream 199335 14669508 ~ 14669725 (-)
G295783 NA non-coding downstream 272648 14594416 ~ 14596412 (-)
G296237 NA non-coding upstream 428537 15322991 ~ 15323410 (-)
G296731 NA non-coding upstream 1257880 16152334 ~ 16155973 (-)
G296734 NA non-coding upstream 1262880 16157334 ~ 16165845 (-)
G296733 NA non-coding upstream 1269037 16163491 ~ 16165288 (-)
LOC117599726 NA non-coding upstream 1444628 16339082 ~ 16342070 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 97025 14726401 ~ 14772035 (-)
trnal-cag_15 NA other downstream 272665 14596313 ~ 14596395 (-)
trnal-cag_14 NA other downstream 274429 14594549 ~ 14594631 (-)
trnal-cag_13 NA other downstream 275067 14593911 ~ 14593993 (-)
trnal-cag_12 NA other downstream 276585 14592135 ~ 14592475 (-)
pkib pkib other upstream 379400 15273854 ~ 15304297 (-)
G296263 cx32,LOC108257940,LOC108424424 other upstream 568627 15463081 ~ 15482361 (-)
pln NA other upstream 1239680 16134134 ~ 16142616 (-)
G296802 igf2r other upstream 1660649 16555103 ~ 16557927 (-)
ttc32 ttc32 other upstream 2148712 17043166 ~ 17046831 (-)

Expression


Co-expression Network