smpdl3a (smpdl3a)


Basic Information

Item Value
gene id smpdl3a
gene name smpdl3a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 15233937 ~ 15244412 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922567.2
TGCGACACAATGAAAGCACGTGATCTCTGTGTACTTCCGGTTGGGGTTCTCGGCTGTGTCATAAGAAGCAGGATCAGAGCTGAGTGCTATGAAGTGAAGTCATGGGGCTGGTTTTGTTTTGCTGGGTCGCTTCGCTTTTTTACCAGCAGATTGGTGCTGCACCAAGAAATGAGGGCTTTAGACAGAGACCCCTACTGGATATAAGTAAATTCTGGCATATCTCAGACCTGCACATCGATCCTACCTACCATGTCACAGAAGATCGCACCAAAGTGTGTTACTCCTCAAAGGGCTTCCCTGCATCCGACCCAGGAATTTTTGGAGATTTCATGTGCGATTCTCCTTACGAGCTAATTCTGTCTGCCTTCAGCTATATGAACATCGTGGACCTTGAGCCTGAATTTATGATCTGGACTGGAGACAGCCCTCCACATGTTCCAGTAGATAAGCTGTCCACAGACACTGTGATAAATATGATCAGCAATATGACGCACACCATACGCCAGTTCTTCCCTCAGCTGCCAGTGTACCCTGCCCTGGGCAACCACGACTACTGGCCACAGGATCAACTTCCAGtgaatgaaaatgacatttacGAGGCTGTAGCCAGACTTTGGTCTCCATGGCTACAACCAGAAGCCCTTGTGACTCTACGTAAAGGGGGCTTTTACTCTCAGCTGATTAAGCCTGGACTCCGGCTGGTGAGCCTGAACACAAACCTTTACTACAGTCCCAACAAAGTAACGGTGAACATGTCTGACCCAGCTGGCCAGTATCAGTGGCTGCAGGACACGCTGGAGCTTTCCAGACAGAACATGGAGAGGGTCTATGTGATTGCTCATGTCCCAATTGGTTACCTGCCCTATGctaaaaacaccacagcaatgAGGGAGGGTGACAATGAAAGACTTGTGGACATATTCCGCAACTACAGCGACATTATTCAGGGACAGTTTTATGGTCACACTCATCGAGACAGCGTGATGGTTCTTCTGGATCGTAAAGGGAAGCCTGTTAACTCCATCTTTGTGACGCCGGCTGTGACCCCATACAGAAATTTTCTAGAGCAATATTCGAATAACCCTGGCATCCGCATGTACCTGTACAACTCCCAGGACTACGGCTTACAGGATCTTTGGCAGTTCTACTTGAATCTAACTGAAGCAAATCAGGAAGAAAAGCCCAATTGGAGACTTGAATACATTATGACCAAAGCTTTTGGTATCAAGGACATTCAGCCAGAAAGCCTGCATGAACTCGCACTAAAGTTCGAAGCGCCAGAAAGCAAAGAATTCCAGAAGTACTTCACTTATTTCATGGTCAGTTACAACGACACTATCACTTGTACAGAGGAGTGTAAAACAGTACAGGTCTGTTCTGTACACTTTTTGGACCACAAGTCCTATTCAGAGTGTGTGCAAAAGCTCAAAGGTggtgaattttaataaaagggAGTAAATAAAGGGAATATGCAATAAAGGGAATAAATCTTAGCTTTTCTGCCAGTAAAAGAAGTGAATCTTTTAGTTTACGGGTATTCTTTTAAAACAAAGGGAAAATACAGAAAGCACAAGTGTTACATTGTAGGATTTATTACTCTTACTGGCAGCTAAAGACTAGAACCAAACCATATACGTGACTGGGTATGTTCTTGCTCTGCTGACTCAACATGGTCATTTAATCAAATATTTCTTCTAACTTTACACAggtttttaattctgtttgatttttctagaaataagaAATTATTGCTGtgaatcttttcattttttttctgattgtttctTTTAAAGGGATTTGCATTGTTTAGTCAAaattacatcatatttttatatcatttatatgaagggtattattatattttcaggGAAGTGCTTAATTTTATGGACATTATTGAGGcaaatgattaattttatgCAGATTTATTGTACAATAGGGCCATCAATGTACAATAAAGACATGACTGTTAAAAGCT

Function

symbol description
smpdl3a Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within sphingomyelin catabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SMPDL3A (sphingomyelin phosphodiesterase acid like 3A).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: acid sphingomyelinase-like phosphodiesterase 3a, partial

GO:

id name namespace
GO:0006685 sphingomyelin catabolic process biological_process
GO:0005615 extracellular space cellular_component
GO:0004767 sphingomyelin phosphodiesterase activity molecular_function

KEGG:

id description
K01128 SMPDL3; sphingomyelin phosphodiesterase acid-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922567.2 True 1975 mRNA 0.42 8 15233937 15244412

Neighbor

gene id symbol gene type direction distance location
clvs2 clvs2,LOC107675233,LOC107675107 coding downstream 7162 15196936 ~ 15226775 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617 coding downstream 131964 14905124 ~ 15101973 (-)
rnf217 rnf217 coding downstream 339483 14869060 ~ 14894454 (-)
tpd52l1 tpd52l1 coding downstream 372698 14843033 ~ 14861239 (-)
hey2 hey2,LOC107717129,LOC107727582,LOC106571366 coding downstream 448866 14777077 ~ 14785071 (-)
LOC113531927 NA coding upstream 4136 15248548 ~ 15250762 (-)
LOC117599773 NA coding upstream 13961 15258373 ~ 15259420 (-)
LOC113531926 NA coding upstream 27699 15272111 ~ 15273853 (-)
hsf2 hsf2 coding upstream 79428 15323840 ~ 15334768 (-)
cx43 LOC108257942,LOC107675226,LOC107602186,LOC107716890,LOC107598086 coding upstream 212597 15457009 ~ 15460449 (-)
G295909 NA non-coding downstream 441188 14792540 ~ 14792749 (-)
G295836 NA non-coding downstream 545301 14688358 ~ 14688636 (-)
G295828 NA non-coding downstream 563627 14670101 ~ 14670310 (-)
G295827 NA non-coding downstream 564212 14669508 ~ 14669725 (-)
G295783 NA non-coding downstream 637525 14594416 ~ 14596412 (-)
G296237 NA non-coding upstream 78579 15322991 ~ 15323410 (-)
G296731 NA non-coding upstream 907922 16152334 ~ 16155973 (-)
G296734 NA non-coding upstream 912922 16157334 ~ 16165845 (-)
G296733 NA non-coding upstream 919079 16163491 ~ 16165288 (-)
LOC117599726 NA non-coding upstream 1094670 16339082 ~ 16342070 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 461902 14726401 ~ 14772035 (-)
trnal-cag_15 NA other downstream 637542 14596313 ~ 14596395 (-)
trnal-cag_14 NA other downstream 639306 14594549 ~ 14594631 (-)
trnal-cag_13 NA other downstream 639944 14593911 ~ 14593993 (-)
trnal-cag_12 NA other downstream 641462 14592135 ~ 14592475 (-)
pkib pkib other upstream 29442 15273854 ~ 15304297 (-)
G296263 cx32,LOC108257940,LOC108424424 other upstream 218669 15463081 ~ 15482361 (-)
pln NA other upstream 889722 16134134 ~ 16142616 (-)
G296802 igf2r other upstream 1310691 16555103 ~ 16557927 (-)
ttc32 ttc32 other upstream 1798754 17043166 ~ 17046831 (-)

Expression


Co-expression Network