G296734


Basic Information

Item Value
gene id G296734
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16157334 ~ 16165845 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU351367
cTCTGTACAAATGGAAAGCatatatttttgtcctttttgtgttttacatgaaaaaatatGAGTCAATACTTTctgtaaatgtacataaatagaGCTTTGGCATGTGGAAAGTCGAGCTGAAAAACTAAAAGCTCCAAGTACGTTTAGATCAGAGAGTGGCTGTAGTGCAGTAAAGCCAACCAGCGGCCTCCAGCACACAGTGTGATCACAATCGGCCATGACAACCACGCGCGTCTGCGTCTGCGCCCCGCCCGCCTGcgtctgcgcacacacactccatcaggTTCGTCTTCACTTAACCTGAGTAGAAATCTGCATTGTTTGTGCCTATGGCTTCACTCGTCATGCCGATTTCagacacacacacacacacacacctctgcacgGCAGCCACCAGCTCCTTCTCCCTCTTGGACTGTCTCTCGATGAGCGCGTCTTTCTCCTGCAGACGAGTTCGGCTCTCCTCTAAGCTCCGCTccagctgcaccactgtgtcCTGCAGCGTCTGTGCCTTCGCCTGTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU351367 True 524 lncRNA 0.50 2 16157334 16165845

Neighbor

gene id symbol gene type direction distance location
trnav-cac_21 NA coding downstream 378035 15779227 ~ 15779299 (-)
trnad-guc_29 NA coding downstream 383154 15774109 ~ 15774180 (-)
trnav-cac_19 NA coding downstream 383372 15773890 ~ 15773962 (-)
trnad-guc_28 NA coding downstream 386451 15770812 ~ 15770883 (-)
trnav-cac_17 NA coding downstream 386669 15770593 ~ 15770665 (-)
si:dkeyp-114g9.1 LOC108257881,LOC107603058 coding upstream 584 16166429 ~ 16181922 (-)
slc35f1 slc35f1,LOC107678858,LOC107727669,LOC107697151,LOC107743307,LOC106571386 coding upstream 18408 16184253 ~ 16299085 (-)
nus1 nus1,LOC107549681,LOC107736830 coding upstream 147766 16313611 ~ 16326865 (-)
LOC113531921 LOC108257860 coding upstream 161736 16327581 ~ 16334071 (-)
dcbld1 dcbld1 coding upstream 196257 16362102 ~ 16398260 (-)
G296731 NA non-coding downstream 1361 16152334 ~ 16155973 (-)
G296237 NA non-coding downstream 833924 15322991 ~ 15323410 (-)
G295909 NA non-coding downstream 1364585 14792540 ~ 14792749 (-)
G295836 NA non-coding downstream 1468698 14688358 ~ 14688636 (-)
G295828 NA non-coding downstream 1487024 14670101 ~ 14670310 (-)
LOC117599726 NA non-coding upstream 173237 16339082 ~ 16342070 (-)
G296823 NA non-coding upstream 426068 16591913 ~ 16592120 (-)
G296835 NA non-coding upstream 448695 16614540 ~ 16614771 (-)
G296965 NA non-coding upstream 575396 16741241 ~ 16807322 (-)
G296993 NA non-coding upstream 679270 16845115 ~ 16846008 (-)
pln NA other downstream 14718 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 674973 15463081 ~ 15482361 (-)
pkib pkib other downstream 853037 15273854 ~ 15304297 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 1385299 14726401 ~ 14772035 (-)
trnal-cag_15 NA other downstream 1560939 14596313 ~ 14596395 (-)
G296802 igf2r other upstream 389258 16555103 ~ 16557927 (-)
ttc32 ttc32 other upstream 877321 17043166 ~ 17046831 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 1068132 17233977 ~ 17236129 (-)
esr1 esr1 other upstream 1319739 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 1541441 17707286 ~ 17715272 (-)

Expression


Co-expression Network