G296965


Basic Information

Item Value
gene id G296965
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16741241 ~ 16807322 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU351652
taaaatctgaatttatttatgatttacaaAAGCCTAACATGTAACaaccattaaaatgaaatcaaataaacTCTTCCTGAACCTAAAGTGATAAACGTATGAGTGTGTATACATGTCAGTTTACATTTCTGAAGCAGAAATAAAAGGTGAAGGAATATTGACACTATAGTGTTATGTATTGGTTCAATTTACAAAGTTTGTGtattcttggaaaaaaaaataatttacacataCACCAGCAAGTCCAGAGTGTCAATGGAGATATACAACCACATGTTCAACTTTAACTCCAATACTGTGGTCAAGGGAAATGGAGCTAAATTCAGAATGACGTTATAACATCAGGGCTGGTCTGAAAATGatagaagaaaggaaaaaaataaaagatgaaataatCCTTTTTGCTTTTCGTTAATCAATTTCCAACTCGCGTGGCCCTGACTTCTAGTTAACCGTTACAATGTTCAAATAAATACCTGCAAAAGCAAGGCTTCTGTATTCGTCTCTTTTCCTTTCACTTCTTCACTGACATCACGTCTTTAACCTCAGCTGAACTAACACACATCCGTTCAGTTCACTTCAATTAAATCACATccttttcataataataaaaaactaaaagtgGGAAAATAGAAAACTATTATAATAGAAACtattataatagaaaaatataaaactgaaaCTTTCGCTCTCTCTGGaattataatataaacacaaaccTCCTCTTCTCGATCCTGAAGCCAGAGGAAGACCGACGTTCAACGAGATTCATGAACTCTGCCTAAGTGTTAAAACGTTTACAGGGACACACCAAAAAGTCCGACCGTGTAAGTGAACAAACGGGCGAATGATCTGGAACGACCTCGCTCTCTTACATGTCTGTACTGGGAGACAGGAAACTGGTCCAAATCAGAAATGTCCAGAAATGTccagaaaaggggaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaagtgtcaCTTGATATGCTCCCAAacccaattccaatcttttccatttgttacaggatcagctcagattctttcttttatttctcagaCATCTGATCCACCATTTCTTGCTGGTATTAGACTGATACTGATCCCGAGTATCGCATCAGTCCCAGCTCTAACTTCTTCCAAAAGAATTTTCCATCATTTTGAGCGAAACTCCACACTTTTCCAGAAACGTGTGTAACGCTAACGAAACACACAAGTCATGAGGTAGACGTGAAACCATACAACAGcctgacaaacacacaatgcacagaaatttcaacacacacacacacacacacacacacacacacacacagttttacgATGGTGAAATCACTAAAATAAGACGTTTTATTCACACAAAGCTGATTTCCACTCACCAGTGCTGTGCTGTGCTCCTCTGAGCCTGCATACACTGAGACCAGTTCGTCCAGGACTTTATACATAACTACactcaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctgcctCCAGCAAACACACTGCAGTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU351652 True 1542 lncRNA 0.37 2 16741241 16807322

Neighbor

gene id symbol gene type direction distance location
LOC113531776 unc93a,LOC108257541,LOC108257560 coding downstream 96484 16625619 ~ 16644757 (-)
ttll2 ttll2 coding downstream 119096 16618474 ~ 16622145 (-)
gpr31 gpr31 coding downstream 140670 16597116 ~ 16600571 (-)
plg plg coding downstream 152721 16570413 ~ 16588520 (-)
trnal-cag_16 NA coding downstream 234328 16506831 ~ 16506913 (-)
LOC113532136 LOC108257755 coding upstream 2556 16809878 ~ 16812493 (-)
moxd1l NA coding upstream 11359 16818681 ~ 16836599 (-)
si:ch211-203k16.3 LOC108257753,LOC108424433,LOC107603096,LOC107549701,LOC107697150 coding upstream 74515 16881837 ~ 16909398 (-)
efr3bb efr3b,efr3bb,LOC108424480,LOC107678842,LOC107549699 coding upstream 106383 16913705 ~ 16961617 (-)
LOC113531763 LOC102294303 coding upstream 183230 16990552 ~ 16991727 (-)
G296835 NA non-coding downstream 126470 16614540 ~ 16614771 (-)
G296823 NA non-coding downstream 149121 16591913 ~ 16592120 (-)
LOC117599726 NA non-coding downstream 399171 16339082 ~ 16342070 (-)
G296734 NA non-coding downstream 575396 16157334 ~ 16165845 (-)
G296733 NA non-coding downstream 575953 16163491 ~ 16165288 (-)
G296993 NA non-coding upstream 37793 16845115 ~ 16846008 (-)
G296994 NA non-coding upstream 38799 16846121 ~ 16847214 (-)
G297011 NA non-coding upstream 72074 16879396 ~ 16881821 (-)
G297044 NA non-coding upstream 241452 17048774 ~ 17048993 (-)
G297045 NA non-coding upstream 243073 17050395 ~ 17050639 (-)
G296802 igf2r other downstream 183314 16555103 ~ 16557927 (-)
pln NA other downstream 598625 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 1258880 15463081 ~ 15482361 (-)
pkib pkib other downstream 1436944 15273854 ~ 15304297 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 1969206 14726401 ~ 14772035 (-)
ttc32 ttc32 other upstream 235844 17043166 ~ 17046831 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 426655 17233977 ~ 17236129 (-)
esr1 esr1 other upstream 678262 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 899964 17707286 ~ 17715272 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 1265223 18072545 ~ 18105993 (-)

Expression


Co-expression Network