G296993


Basic Information

Item Value
gene id G296993
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16845115 ~ 16846008 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU351686
TACAGTAATGACGCTGCAGTCACGTATACAGCTGTTaggtttataaagcactgagagTTACAGTAATGACACTGCAGTCACGTATACAGCTGTTaggtttataaagcactgagagTTACAGTAATGACACTGCAGTCACGTATACAGCCGTTaggtttataaagcactgagagTTACAGTAATGACACTGCAGTCACGTATACAGCTGTTaggtttataaagcactgagagTTACAGTAATGACACTGCAGTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU351686 True 255 lncRNA 0.41 2 16845115 16846008

Neighbor

gene id symbol gene type direction distance location
moxd1l NA coding downstream 8516 16818681 ~ 16836599 (-)
LOC113532136 LOC108257755 coding downstream 32622 16809878 ~ 16812493 (-)
LOC113531776 unc93a,LOC108257541,LOC108257560 coding downstream 200358 16625619 ~ 16644757 (-)
ttll2 ttll2 coding downstream 222970 16618474 ~ 16622145 (-)
gpr31 gpr31 coding downstream 244544 16597116 ~ 16600571 (-)
si:ch211-203k16.3 LOC108257753,LOC108424433,LOC107603096,LOC107549701,LOC107697150 coding upstream 35829 16881837 ~ 16909398 (-)
efr3bb efr3b,efr3bb,LOC108424480,LOC107678842,LOC107549699 coding upstream 67697 16913705 ~ 16961617 (-)
LOC113531763 LOC102294303 coding upstream 144544 16990552 ~ 16991727 (-)
mixl1 NA coding upstream 177127 17023135 ~ 17026173 (-)
zpax1 LOC108257994 coding upstream 184346 17030354 ~ 17041447 (-)
G296965 NA non-coding downstream 37793 16741241 ~ 16807322 (-)
G296835 NA non-coding downstream 230344 16614540 ~ 16614771 (-)
G296823 NA non-coding downstream 252995 16591913 ~ 16592120 (-)
LOC117599726 NA non-coding downstream 503045 16339082 ~ 16342070 (-)
G296734 NA non-coding downstream 679270 16157334 ~ 16165845 (-)
G296994 NA non-coding upstream 113 16846121 ~ 16847214 (-)
G297011 NA non-coding upstream 33388 16879396 ~ 16881821 (-)
G297044 NA non-coding upstream 202766 17048774 ~ 17048993 (-)
G297045 NA non-coding upstream 204387 17050395 ~ 17050639 (-)
G297049 matn3a,LOC108257995,LOC108424436 non-coding upstream 208356 17054364 ~ 17055003 (-)
G296802 igf2r other downstream 287188 16555103 ~ 16557927 (-)
pln NA other downstream 702499 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 1362754 15463081 ~ 15482361 (-)
pkib pkib other downstream 1540818 15273854 ~ 15304297 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 2073080 14726401 ~ 14772035 (-)
ttc32 ttc32 other upstream 197158 17043166 ~ 17046831 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 387969 17233977 ~ 17236129 (-)
esr1 esr1 other upstream 639576 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 861278 17707286 ~ 17715272 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 1226537 18072545 ~ 18105993 (-)

Expression


Co-expression Network