mixl1


Basic Information

Item Value
gene id mixl1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17023135 ~ 17026173 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923667.2
TTGAGTGAGAGCAGTGAGAGCAGTGGGAGCTACTGCAGCTCCTGTGCACTGAGCAGCCTGCAGCCCTGCAGCCTGGAGAGGTGCAATGTTGCCAATGGATGCAGGATGTTTCCAGGTAAAAAGCCCTAAATGTTTTTTCAGCTGATGTGTATTCGGGGAGGAGAGTCCATTAAGAGTGCACAAACGTGTTGGGTGGATGCCGCGTTCACGCATTCACACCCGCAGCCCCATCAGCGCGCGCGCACAACAAAGTGGACGGAGGTCACCCCGGTGCCAGCCGCTGCTTATCCTCGCACTTCCGGTGCGCTTTGATCAGCCGAGCGCATTCAGGACTATATATACAACCTCACCgcactatcacacacactcacacacactcccatcaGAACACGGATACAAGCAGAAGGACATGGCGACTCTACACGGCCAGCTCATGAGCACGGAATACCCACAACACCCCGCGTTTCCAGCCAGCACCCtgagcaggagcagcagcatgCAGCCTGCAGACTACAGCGTGTACGAGAGAGCGGCTTTGGTGAAGAACAGCAGGCCCGTGATGGACAGCGCGGCTCTTCTGACACACCGCAGGAAGAGAACCAACTTCACCCAGCAGCAGATCGAGGTGCTGGAGAAAGTCTATTCGGACACCAAGTACCCGGATATTTACCTGCGGGAGAGACTGGAAGCGCTGACTGGCTTACCTGAATCTAGGATCCAGgtATGGTTTCAGAACCGACGTGCCAAATCACGACGTCAGGTCGGAGCTCCAGTTCCCGTGAAGCCCAAAGCAAGCATTCCCATCATCCCAAACAGACCTCCGGCTTCTTACCCCCTTCAACACGAGCAGCTGGGGCAGGAGCTGAGGGGCAACTTCACTCAACCAGGCCAGGAGCTGAGAGGCATCTTTCCTCAACCACACCGAGGTTACGACTCCCACTCCATGTCCTGCTTGTTCAGTCAGGCTAGCGATGACCGGATCAGAGTGGATCAGGTGAAGAGAGACGACCTGCGCGACCTCCATCAGTACCACAGGGCAAACGGACACATTTCAGCTCAGAGCAAGCCCGAGCCCTCAGTGAAGCCCATGTTAGTGGACTATGACAATTTCCCTCCTAACAGAACCATCGGCCCTGACATGAGAGTGGTCATCCCTCCAGTCCCGACGCAGGTGAACTTCATCCCAAACCGGTCTCCACCGACGCAGATTGCCTGTCCTCTGCAGCACACGCAAGTCAGAGTGCCACACGACAGCGTGGGTCATTTTTCACCGATCGGCAGCAGCGACGCGGGAGATTTTTCCGATTCTGACTCCGACTGGGAGAAAGAAGCCCTGGCTGGATTTAATGCTTTCATATAATTAgtttgttcctctttcagccaatgtatt

Function

NR:

description
homeobox protein Mix.1-like isoform X2

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0003007 heart morphogenesis biological_process
GO:0005515 protein binding molecular_function

KEGG:

id description
K24900 MIXL1; homeobox protein MIXL1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923667.2 True 1390 mRNA 0.55 3 17023135 17026173

Neighbor

gene id symbol gene type direction distance location
LOC113531763 LOC102294303 coding downstream 31408 16990552 ~ 16991727 (-)
efr3bb efr3b,efr3bb,LOC108424480,LOC107678842,LOC107549699 coding downstream 61518 16913705 ~ 16961617 (-)
si:ch211-203k16.3 LOC108257753,LOC108424433,LOC107603096,LOC107549701,LOC107697150 coding downstream 113737 16881837 ~ 16909398 (-)
moxd1l NA coding downstream 186536 16818681 ~ 16836599 (-)
LOC113532136 LOC108257755 coding downstream 210642 16809878 ~ 16812493 (-)
zpax1 LOC108257994 coding upstream 4181 17030354 ~ 17041447 (-)
laptm4a laptm4a,LOC107743288,LOC107678852 coding upstream 43252 17069425 ~ 17080809 (-)
mideasa LOC108258070 coding upstream 66397 17092570 ~ 17113651 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763 coding upstream 123615 17149788 ~ 17152955 (-)
capn3b LOC108257553,LOC108424491 coding upstream 142014 17168187 ~ 17193647 (-)
G297011 NA non-coding downstream 141314 16879396 ~ 16881821 (-)
G296994 NA non-coding downstream 175921 16846121 ~ 16847214 (-)
G296993 NA non-coding downstream 177127 16845115 ~ 16846008 (-)
G296965 NA non-coding downstream 215813 16741241 ~ 16807322 (-)
G296835 NA non-coding downstream 408364 16614540 ~ 16614771 (-)
G297044 NA non-coding upstream 22601 17048774 ~ 17048993 (-)
G297045 NA non-coding upstream 24222 17050395 ~ 17050639 (-)
G297049 matn3a,LOC108257995,LOC108424436 non-coding upstream 28191 17054364 ~ 17055003 (-)
G297050 NA non-coding upstream 37993 17064166 ~ 17064385 (-)
G297052 NA non-coding upstream 39509 17065682 ~ 17066428 (-)
G296802 igf2r other downstream 465208 16555103 ~ 16557927 (-)
pln NA other downstream 880519 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 1540774 15463081 ~ 15482361 (-)
pkib pkib other downstream 1718838 15273854 ~ 15304297 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 2251100 14726401 ~ 14772035 (-)
ttc32 ttc32 other upstream 16993 17043166 ~ 17046831 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 207804 17233977 ~ 17236129 (-)
esr1 esr1 other upstream 459411 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 681113 17707286 ~ 17715272 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 1046372 18072545 ~ 18105993 (-)

Expression


Co-expression Network