G297052


Basic Information

Item Value
gene id G297052
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17065682 ~ 17066428 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU351752
ttaaaatatatataaaaacatctaCATATATCACTGTCAATACTACcttaataacagaaaataaactaccattaaatggtaaaaatgtaaatacgTACATTATATATCATTTTCTAGATAACAAACCTATTCAGATTTTTCCATCATACAAGATACGgttagtgcaaaagtttgcacacccttaagAATGGAAATGTAGAAGGCATGTAGTGCGTTCAGTCACAGATGTTCCCTTAtcacaagtaataaaaatgctcaaattgtgtgtaatattaattatgtaagattttaacagtttaaaaaagaCTAGATGATATTAGTGCAGAAGTTTGTATGTCCCTTTCtccaataacttttttttactcaccAGAGGATCATaagattatatttttttgcactttttgttAATTggtgtacctttttttttttaaagataaattgTCATGCATTTTATTGCCTAGAAACCATGAgaggtgcacaaacttttgcactaaactgtatgtaatgtaatcagtgttttatttttctttataataaaTTTTCTTTTGCCTGTATTATTGGTTACGAGCCAGTGACACACATATTAACGGTAAAATAAGCACCATCTTTGTCAGTTATTTTCCAGGTGTATTGAGGTATTGAAGCTCTGGAGGTTGTTGTGTTGGAGGTCAGTGTGGTCCATATTGTAGCTTCACTGGAATAGAAAGTGatccaaacatcagaataggcaTCTGAAGGCATCTTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU351752 True 747 lncRNA 0.31 1 17065682 17066428

Neighbor

gene id symbol gene type direction distance location
zpax1 LOC108257994 coding downstream 24235 17030354 ~ 17041447 (-)
mixl1 NA coding downstream 39509 17023135 ~ 17026173 (-)
LOC113531763 LOC102294303 coding downstream 73955 16990552 ~ 16991727 (-)
efr3bb efr3b,efr3bb,LOC108424480,LOC107678842,LOC107549699 coding downstream 104065 16913705 ~ 16961617 (-)
si:ch211-203k16.3 LOC108257753,LOC108424433,LOC107603096,LOC107549701,LOC107697150 coding downstream 156284 16881837 ~ 16909398 (-)
laptm4a laptm4a,LOC107743288,LOC107678852 coding upstream 2997 17069425 ~ 17080809 (-)
mideasa LOC108258070 coding upstream 26142 17092570 ~ 17113651 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763 coding upstream 83360 17149788 ~ 17152955 (-)
capn3b LOC108257553,LOC108424491 coding upstream 101759 17168187 ~ 17193647 (-)
si:dkey-12h9.6 LOC108258171,LOC103045157,LOC108424494,LOC105908978 coding upstream 149785 17216213 ~ 17232098 (-)
G297050 NA non-coding downstream 1297 17064166 ~ 17064385 (-)
G297049 matn3a,LOC108257995,LOC108424436 non-coding downstream 10679 17054364 ~ 17055003 (-)
G297045 NA non-coding downstream 15043 17050395 ~ 17050639 (-)
G297044 NA non-coding downstream 16689 17048774 ~ 17048993 (-)
G297011 NA non-coding downstream 183861 16879396 ~ 16881821 (-)
G297053 NA non-coding upstream 15444 17081872 ~ 17082114 (-)
LOC113531886 NA non-coding upstream 349538 17415966 ~ 17421452 (-)
G297442 NA non-coding upstream 415896 17482324 ~ 17482887 (-)
G297465 NA non-coding upstream 589797 17656225 ~ 17656811 (-)
G297670 NA non-coding upstream 639172 17705600 ~ 17760410 (-)
ttc32 ttc32 other downstream 18851 17043166 ~ 17046831 (-)
G296802 igf2r other downstream 507755 16555103 ~ 16557927 (-)
pln NA other downstream 923066 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 1583321 15463081 ~ 15482361 (-)
pkib pkib other downstream 1761385 15273854 ~ 15304297 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 167549 17233977 ~ 17236129 (-)
esr1 esr1 other upstream 419156 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 640858 17707286 ~ 17715272 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 1006117 18072545 ~ 18105993 (-)
ubr7 LOC108257828,LOC108411326 other upstream 2004032 19070460 ~ 19083511 (-)

Expression


Co-expression Network