LOC113531886


Basic Information

Item Value
gene id LOC113531886
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17415966 ~ 17421452 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403302.2
AAGTCATCCAGGTTAGCCGTGGCAGCGGATTCCATGGACTGGTCGTACAGCTCCTGTAGGGGAGCGCGACTTAACGGGGCCCTTCCTGAAGCCTGAGGAAGAAGTGCTTCAGTGATGCAACCGCAGGGCAATCACTCACCCGGGACAAGACTCAGAGTTTCCCGAGCCAGTTGCAGAACAGCAGAACAGCAGGACAAGCAATTGTATGACACAGGAAGGAGGAGAACGAAGGCTTAATGAAGGCGGGACGCTACAATGCTGATTTGTAAGAAAGGCCAGTCTTCAAGGCAGTACAGCTGTTtgcagtaagaaaaaaaaaccacccagAAAGCCTACGACTGCTCGATTGTGAATTCCCGGCCAATCAGAGCATGCTCAGGGCGGGACAGTTACTAAGGCCTAGAGAAGGATTCTGCATGAAAGGCGTAGCTCTGAACCAATGGGaaaactgaaaaggaaaaaaagtagGAGGAGTGAAAagtaagggggaaaaaatctggaGAGCGAGGCAGGACTTCCTCTCCaaccagccacacacacacattcacacaaagaGGAAAAGCCGGCACAGGAAatgacctgagagagagagaggagggggggCTGAGCCACCCGTCTGtgatttccttccttcctctgcACCAATCACAAGCAGCTTCACCACAAACAAAGCAAGCAAGAGGAGGAGAGCTCAGATTACACATTTCTCCTGAGAAACCCGTCCTCctctgcccacacacacacacacacacacacacacacacacacacacacacactgcaccaatGAGCTCA

Function

GO:

id name namespace
GO:0048738 cardiac muscle tissue development biological_process
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403302.2 True 794 lncRNA 0.51 4 17415966 17421452

Neighbor

gene id symbol gene type direction distance location
myct1a myct1 coding downstream 156100 17256381 ~ 17259866 (-)
serac1 serac1,LOC107555766 coding downstream 167045 17237824 ~ 17248921 (-)
si:dkey-12h9.6 LOC108258171,LOC103045157,LOC108424494,LOC105908978 coding downstream 183868 17216213 ~ 17232098 (-)
capn3b LOC108257553,LOC108424491 coding downstream 222319 17168187 ~ 17193647 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763 coding downstream 263011 17149788 ~ 17152955 (-)
armt1 armt1 coding upstream 90995 17512447 ~ 17520711 (-)
akap12b akap12 coding upstream 117458 17538910 ~ 17600760 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107721348,LOC107659212,LOC107665399 coding upstream 187139 17608591 ~ 17666128 (-)
gpr176 gpr176,LOC102785786 coding upstream 262545 17683997 ~ 17699560 (-)
LOC113532304 LOC108257600 coding upstream 339167 17760619 ~ 17767511 (-)
G297053 NA non-coding downstream 333852 17081872 ~ 17082114 (-)
G297052 NA non-coding downstream 349538 17065682 ~ 17066428 (-)
G297050 NA non-coding downstream 351581 17064166 ~ 17064385 (-)
G297049 matn3a,LOC108257995,LOC108424436 non-coding downstream 360963 17054364 ~ 17055003 (-)
G297045 NA non-coding downstream 365327 17050395 ~ 17050639 (-)
G297442 NA non-coding upstream 60872 17482324 ~ 17482887 (-)
G297465 NA non-coding upstream 234773 17656225 ~ 17656811 (-)
G297670 NA non-coding upstream 284148 17705600 ~ 17760410 (-)
G297712 NA non-coding upstream 420109 17841561 ~ 17842853 (-)
G297718 NA non-coding upstream 433433 17854885 ~ 17953471 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 179837 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 369135 17043166 ~ 17046831 (-)
G296802 igf2r other downstream 858039 16555103 ~ 16557927 (-)
pln NA other downstream 1273350 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 1933605 15463081 ~ 15482361 (-)
esr1 esr1 other upstream 64132 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 285834 17707286 ~ 17715272 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 651093 18072545 ~ 18105993 (-)
ubr7 LOC108257828,LOC108411326 other upstream 1649008 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 1953321 19374773 ~ 19410374 (-)

Expression


Co-expression Network