armt1 (armt1)


Basic Information

Item Value
gene id armt1
gene name armt1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17512447 ~ 17520711 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922726.2
TGAAGCAGATAGCGCTCTGTCTTCCTCTTAGCGTTAGCCAAGATGGCGGCGGATCAAGTTCTTATTCCTCCACCGTCGCTGTCAGCTAAATACGAAGGatCTTTTGCGTATCTGACGGTAAGAGACAGGCTGCCGATGATCCTGACCAAAGTCATCGATACCATTCACCGAAACAAAAACAACTTCTTTGAGAAACATGGGGAGGTGGGCGTGGAAGCAGAGAAAAGAGCCATCTCCTTCCTGTCCAAGCTGAGGAACGAGCTACAGACAGACAAACCCGTGCTGCTCCTGACTGACTCTGCAGACGATACGGAAGCGTGGAACCGGTACATGCAGAGACAACAGGACCTGATGGAGGACAGGCAGCCGGTCAGCTGGTTCAAGTCACCCTGGCTCTATGTGGAGTGCTACATGTACAGGAGGATCCAGGAGGCCTTGTGGCTCAGTCCTCCAATCAGTGATTTTGACGCCTTTAAGGAAGGAAAGACGAGCGGCTTCTTCGAGTCCCAGCAAGCGATCATCTCACTCTGTACGTACCTACGAGAGATCCTCGCCTCCACAGATAACGCAAGCAAGAAATGGCTCTTCGAACATTTCTTCAGGCTTCTGCAGGTGTCCCTGTGGGGAAACAGGTGTGATTTATCCATCTCAGCTGGCCAGGAAAACTCTCAGAAGTCCAACCCGATGGATTGTCTGGCTGATCTGCAGCAGTTCATCCTAGTGGATGATTCGGATAAGGTTTGGTCCATTTTAACGTCTGCACAAGGTTCTGGAGGATCGGAGAAGACTGGCATTAGAGTGGACATCATTCTAGACAACGCTGGCTTTGAGCTAGTCACCGATCTGGTACTCGCAGATTTTATGGTCTCCGTCGGCTTGGCGAAGGAAGTGCGTTTCCATGGCAAGTCCATCCCGTGGTACGTCTCTGATGTCAACAAGCAGGATTTCGATTGGACCATTTCGCAAACCACAGCATCCAATCACAAGCACATGTCGTCCTGCGGCGTCCAGTGGAAGCGCCACGTTAAAGATGGAGCTTGGTCGTATCACGACCATCGCTTCTGGACTTTACCGCACGAGTTCTGCGACATGCCAGCAGAAGCCGCAGATCTCTACTCCACTCTACAGGGTTCCGATCTGATCCTGTTTAAAGGAGACCTGAACTACCGCCGGCTGACGGGAGACAGAATGTGGGAGCACACTGTGCCGTTCGAACGAGCGCTCAGGGGCTTCCTGCCTGCTCCGCTGTGCAGCCTCAGGACTCTGAAGGCTAACGTGCAGGTCGGGTTACAGCCAGGCCAGGCGGAGAAACTCGCCTCTCAGGACCCCGAGTGGATGATCAGCGGCAAATACGCAGTGATTCAGTTCTGCAGTCCACTCaaagaacagcagcagcagggttCTTAAAGATGCCAAGAGAACAACAATaccaaaaaagagaaatgagatGGGATAGTAGTCATTAATTACAAGCTAGAATAATTtctctttaatgtttttttttaatccttaatATCAGAGTCTTACCAGATGGCTATGACAGTTTTCAGATATCCAAGTAGGTAAAAATGTCTAGTAGTAATGACTCAATGTAACTGGACTTAGATCTTTGTTACATTTACAGAGGAATGTGAAAATGCATTCTTACAACCAGAATATTTGTCCAGGGAACACACGTACACCTTCTAGATATTCAGTTTGTTAAGAAGTGAATGCAAACAACTTTACCTGACTATAACAAATTGTTTTTCGGctgcttaattattttttttcaaccagCAGAGCATGAGTTATAACATTTTCGCTTTTTTACCTCCCAGCCAATCAGGGTCCAAGTTGCAGGGAAACCaccatggaggacaaagtgactgtaaaaaagacaaaaaattagTCTTGTTATTGAGCAAAAGTGAGGagatttaagaaaatatttgatTGCCCTTAATCCAGTGTTGCCGTGTAACTAAAacaatgatatatat

Function

symbol description
armt1 Predicted to enable S-adenosylmethionine-dependent methyltransferase activity; phosphatase activity; and protein carboxyl O-methyltransferase activity. Predicted to be involved in methylation and regulation of response to DNA damage stimulus. Orthologous to human ARMT1 (acidic residue methyltransferase 1).

NR:

description
protein-glutamate O-methyltransferase

GO: NA

KEGG:

id description
K23114 ARMT1; damage-control phosphatase, subfamily III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922726.2 True 1982 mRNA 0.47 6 17512447 17520711

Neighbor

gene id symbol gene type direction distance location
myct1a myct1 coding downstream 252581 17256381 ~ 17259866 (-)
serac1 serac1,LOC107555766 coding downstream 263526 17237824 ~ 17248921 (-)
si:dkey-12h9.6 LOC108258171,LOC103045157,LOC108424494,LOC105908978 coding downstream 280349 17216213 ~ 17232098 (-)
capn3b LOC108257553,LOC108424491 coding downstream 318800 17168187 ~ 17193647 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763 coding downstream 359492 17149788 ~ 17152955 (-)
akap12b akap12 coding upstream 18199 17538910 ~ 17600760 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107721348,LOC107659212,LOC107665399 coding upstream 87880 17608591 ~ 17666128 (-)
gpr176 gpr176,LOC102785786 coding upstream 163286 17683997 ~ 17699560 (-)
LOC113532304 LOC108257600 coding upstream 239908 17760619 ~ 17767511 (-)
LOC113531908 NA coding upstream 247833 17768544 ~ 17775954 (-)
G297442 NA non-coding downstream 29560 17482324 ~ 17482887 (-)
LOC113531886 NA non-coding downstream 90995 17415966 ~ 17421452 (-)
G297053 NA non-coding downstream 430333 17081872 ~ 17082114 (-)
G297052 NA non-coding downstream 446019 17065682 ~ 17066428 (-)
G297050 NA non-coding downstream 448062 17064166 ~ 17064385 (-)
G297465 NA non-coding upstream 135514 17656225 ~ 17656811 (-)
G297670 NA non-coding upstream 184889 17705600 ~ 17760410 (-)
G297712 NA non-coding upstream 320850 17841561 ~ 17842853 (-)
G297718 NA non-coding upstream 334174 17854885 ~ 17953471 (-)
G297720 NA non-coding upstream 344577 17865288 ~ 17865651 (-)
esr1 esr1 other downstream 5789 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 276318 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 465616 17043166 ~ 17046831 (-)
G296802 igf2r other downstream 954520 16555103 ~ 16557927 (-)
pln NA other downstream 1369831 16134134 ~ 16142616 (-)
acot20 LOC108257587,LOC108257591 other upstream 186575 17707286 ~ 17715272 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 551834 18072545 ~ 18105993 (-)
ubr7 LOC108257828,LOC108411326 other upstream 1549749 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 1854062 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 1908480 19429191 ~ 19451604 (-)

Expression


Co-expression Network