G297712


Basic Information

Item Value
gene id G297712
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17841561 ~ 17842853 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU352529
GATGAGGATGATCTCCAACACACACAGGttaaagttacatgagattactcTGGATGATTCCACTTAGAAActatgaagatggctttggactgcaattgatatgaacagttttgctacgatggccTAGGACTACAACTgatatgatagctttaggactacaattcccatgatcagttttgcactcaaatcagtgaacagttgacaACAAAATAGACTATAGTGAATTTTCGTGGTTACACAGTTGCACATTCtgaccatatagtacacagttatagaagggatttatttataatcgcactatccggtgtcacccagatgaggatgggttcccttttgagtctggttcctctcaaggtttcttcctcatatggcctcagggagtttttcctcaccactgtcacctctggggTGCTCGTTAGGGAtaatttcataaatttaaaatttatatcctgaatttatatttttctgtaaagctgctttgtgacaatgtccattgttaaaagcgctatacaaatacaactgaattgaattgaattgaacaccAGAAGCCGAGTAGATACGCTTCCTTGGATTAGCTGGATGTCGGTGTGCCGTATAATTTTTTGTTCTTAACAATCCTATTacagttaaagaaaatgaaacacacaaagttgggaatgttcttaaatataATTCCTTCTGAATAAGTTTACGAGTAAACACTAATATGTTTAATCCGACGTGTCAGAAAGGTGTCCGAGGAGTAAACTAGTCTTCCGAGCACCCCTACGACGGGCCGTACCATTTCTACACCGTTGTAATTTCAATAGAACAGCTGTAACTGctgtatgaatttatttacCACACTCGTTAACTGAAATATATGTTCGAAACACTAAAATGTATGATGCTAACAAGAGCTGGTTAACTCATCTTGCTACTAACTTGTCAAGAGTCACCTTTACTATGATCAATGTTTAGGCTTCCTGAATGTAAAGAGGACTTTAACATAgcacagtcattcattcattcattcattcattcgtGATGAGACTGGAAGGCACCaaactgagaagaaaaaaaaatctgccaaagTGACActgggtaaaaaaaagaaaatgtgttgatgtcacttcctgtcctcAGCACCAGCAGGTCTTTTGGGCGTTACTGCTGCCGTCACACACTCCCGCCTCTTCCTCCAGCGCCGCTAGATCCAGCTGGTCATTGATGGACACCCGCAGGAGATCAAGGTCCTTTTTATTAGCCTGCAACACCAGCTCAGCCAAACGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU352529 True 1273 lncRNA 0.40 2 17841561 17842853

Neighbor

gene id symbol gene type direction distance location
fntb fntb,LOC108257588,LOC108424508,LOC107756604,LOC107668263,LOC107721314,LOC107671778,LOC106571088,LOC105024336 coding downstream 16161 17808298 ~ 17825400 (-)
LOC113531908 NA coding downstream 65607 17768544 ~ 17775954 (-)
LOC113532304 LOC108257600 coding downstream 74050 17760619 ~ 17767511 (-)
gpr176 gpr176,LOC102785786 coding downstream 142001 17683997 ~ 17699560 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107721348,LOC107659212,LOC107665399 coding downstream 175433 17608591 ~ 17666128 (-)
zfyve1 zfyve1,LOC107721321 coding upstream 273697 18116550 ~ 18130493 (-)
rhov rhov,LOC107602886,LOC107721274,LOC107659156,LOC107668201,LOC107562688 coding upstream 323526 18166379 ~ 18169095 (-)
chac1 chac1,LOC107721326,LOC107739370 coding upstream 407419 18250272 ~ 18252460 (-)
dll4 dll4,LOC107562694,LOC107739369,LOC107721368,LOC107602157,LOC107668208 coding upstream 429223 18272076 ~ 18282680 (-)
vrtn vrtn coding upstream 733117 18575970 ~ 18580206 (-)
G297670 NA non-coding downstream 81151 17705600 ~ 17760410 (-)
G297465 NA non-coding downstream 184750 17656225 ~ 17656811 (-)
G297442 NA non-coding downstream 358674 17482324 ~ 17482887 (-)
LOC113531886 NA non-coding downstream 420109 17415966 ~ 17421452 (-)
G297053 NA non-coding downstream 759447 17081872 ~ 17082114 (-)
G297718 NA non-coding upstream 12032 17854885 ~ 17953471 (-)
G297720 NA non-coding upstream 22435 17865288 ~ 17865651 (-)
G297724 NA non-coding upstream 31599 17874452 ~ 17874744 (-)
G297839 NA non-coding upstream 276315 18119168 ~ 18176606 (-)
LOC117599806 NA non-coding upstream 313860 18156713 ~ 18159296 (-)
acot20 LOC108257587,LOC108257591 other downstream 126289 17707286 ~ 17715272 (-)
esr1 esr1 other downstream 334903 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 605432 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 794730 17043166 ~ 17046831 (-)
G296802 igf2r other downstream 1283634 16555103 ~ 16557927 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 229692 18072545 ~ 18105993 (-)
ubr7 LOC108257828,LOC108411326 other upstream 1227607 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 1531920 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 1586338 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 1629167 19472020 ~ 19473976 (-)

Expression


Co-expression Network