RNA id: TU352529


Basic Information

Item Value
RNA id TU352529
length 1273
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G297712
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17841561 ~ 17842853 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGAGGATGATCTCCAACACACACAGGttaaagttacatgagattactcTGGATGATTCCACTTAGAAActatgaagatggctttggactgcaattgatatgaacagttttgctacgatggccTAGGACTACAACTgatatgatagctttaggactacaattcccatgatcagttttgcactcaaatcagtgaacagttgacaACAAAATAGACTATAGTGAATTTTCGTGGTTACACAGTTGCACATTCtgaccatatagtacacagttatagaagggatttatttataatcgcactatccggtgtcacccagatgaggatgggttcccttttgagtctggttcctctcaaggtttcttcctcatatggcctcagggagtttttcctcaccactgtcacctctggggTGCTCGTTAGGGAtaatttcataaatttaaaatttatatcctgaatttatatttttctgtaaagctgctttgtgacaatgtccattgttaaaagcgctatacaaatacaactgaattgaattgaattgaacaccAGAAGCCGAGTAGATACGCTTCCTTGGATTAGCTGGATGTCGGTGTGCCGTATAATTTTTTGTTCTTAACAATCCTATTacagttaaagaaaatgaaacacacaaagttgggaatgttcttaaatataATTCCTTCTGAATAAGTTTACGAGTAAACACTAATATGTTTAATCCGACGTGTCAGAAAGGTGTCCGAGGAGTAAACTAGTCTTCCGAGCACCCCTACGACGGGCCGTACCATTTCTACACCGTTGTAATTTCAATAGAACAGCTGTAACTGctgtatgaatttatttacCACACTCGTTAACTGAAATATATGTTCGAAACACTAAAATGTATGATGCTAACAAGAGCTGGTTAACTCATCTTGCTACTAACTTGTCAAGAGTCACCTTTACTATGATCAATGTTTAGGCTTCCTGAATGTAAAGAGGACTTTAACATAgcacagtcattcattcattcattcattcattcgtGATGAGACTGGAAGGCACCaaactgagaagaaaaaaaaatctgccaaagTGACActgggtaaaaaaaagaaaatgtgttgatgtcacttcctgtcctcAGCACCAGCAGGTCTTTTGGGCGTTACTGCTGCCGTCACACACTCCCGCCTCTTCCTCCAGCGCCGCTAGATCCAGCTGGTCATTGATGGACACCCGCAGGAGATCAAGGTCCTTTTTATTAGCCTGCAACACCAGCTCAGCCAAACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352485 lncRNA downstream 81151 17705600 ~ 17760410 (-) True G297670
TU352484 lncRNA downstream 81151 17734623 ~ 17760410 (-) False G297670
TU352232 lncRNA downstream 184750 17656225 ~ 17656811 (-) True G297465
TU352201 lncRNA downstream 334903 17505906 ~ 17506658 (-) False esr1
TU352197 lncRNA downstream 358674 17482324 ~ 17482887 (-) True G297442
TU352538 lncRNA upstream 12032 17854885 ~ 17953471 (-) True G297718
TU352540 lncRNA upstream 22435 17865288 ~ 17865651 (-) True G297720
TU352544 lncRNA upstream 31599 17874452 ~ 17874744 (-) True G297724
TU352672 lncRNA upstream 276315 18119168 ~ 18176606 (-) True G297839
XR_004580168.1 lncRNA upstream 313860 18156713 ~ 18159296 (-) True LOC117599806
XM_026922989.2 mRNA downstream 16161 17808298 ~ 17825400 (-) True fntb
XM_026922895.2 mRNA downstream 65607 17768544 ~ 17775954 (-) True LOC113531908
XM_026923631.2 mRNA downstream 74050 17760619 ~ 17767511 (-) True LOC113532304
XM_026923737.2 mRNA downstream 126289 17710711 ~ 17715272 (-) False acot20
XM_034313926.1 mRNA downstream 127164 17710711 ~ 17714397 (-) True acot20
XM_026948162.2 mRNA upstream 229692 18072545 ~ 18105993 (-) False dpf3
XM_026948163.2 mRNA upstream 229692 18072545 ~ 18105993 (-) False dpf3
XM_026948161.2 mRNA upstream 229692 18072545 ~ 18105993 (-) True dpf3
XM_034313660.1 mRNA upstream 273697 18116550 ~ 18130493 (-) True zfyve1
XM_026948100.2 mRNA upstream 323526 18166379 ~ 18169095 (-) True rhov
TU352481 other downstream 126317 17707286 ~ 17715244 (-) False acot20
TU351727 other downstream 794751 17043313 ~ 17046810 (-) False ttc32
TU351456 other downstream 1283634 16555103 ~ 16557927 (-) False G296802
TU351457 other downstream 1283634 16555476 ~ 16557927 (-) True G296802
trnal-cag_16 other downstream 1334648 16506831 ~ 16506913 (-) True trnal-cag_16
XR_003404857.2 other upstream 232509 18075362 ~ 18105993 (-) False dpf3
TU353207 other upstream 1235151 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 1422974 19265827 ~ 19267009 (-) True LOC113547697
TU353415 other upstream 1548146 19390999 ~ 19391487 (-) False LOC113525604
XR_004580086.1 other upstream 1605540 19448393 ~ 19451604 (-) False LOC113524711

Expression Profile